Table 2. Primers used in this study.
| Primer | Sequence (5′–>3′) | Description | Origin |
|---|---|---|---|
| Map2 | F-GCATGCTGCTTGCCTTAGG | Maps SCCmec deletion | ref. 5 |
| R-CACACAGCCAAAGCAATCAGC | Maps SCCmec deletion | ||
| Map4 | F-GGTTTCATGTTTGTGCTTCAGG | Maps SCCmec deletion | ref. 5 |
| R-CACGATACAAATCAAAAAAAGGTTGG | Maps SCCmec deletion | ||
| Map7 | F-GTTTCAGACTTTAGCGAGGAATGG | Maps SCCmec deletion | ref. 5 |
| R-CTATGTTGTATTTATCTTCGATAATGG | Maps SCCmec deletion | ||
| Map8 | F-GTGTTGCATTTGGTAGCC | Maps SCCmec deletion | ref. 5 |
| R-CGATGAGTTAAGAGCACGTATC | Maps SCCmec deletion | ||
| Map9 | F-CCGTTCGTTATAAATACTGCC | Maps SCCmec deletion | ref. 5 |
| R-CATGGAAAGTACATATAAAAAAAGAGG | Maps SCCmec deletion | ||
| Map10 | F-TATACTCAGGTGTAGGAATG | 3503VR6 SCCmec deletion site connection | This study |
| R-CGCTAAGATATCCTTCTAGT | Maps SCCmec deletion | ||
| Map11 | F-TGGTTCCTCAATACTAGAAG | Maps SCCmec deletion | This study |
| R-GATAAGACACTCAAGGAAGT | 3503VR6 and 3503VR10 SCCmecdeletion site connection | ||
| Map12 | F-TAGTAACTTGGCGCTCATCA | Maps SCCmec deletion | This study |
| R-GAACAAGGTGGGATTTCATG | Maps SCCmec deletion | ||
| Map13 | F-TGCTCTTAGTGTTCAACAGA | Maps SCCmec deletion | This study |
| R-GTTCATAGCGCTGATATGAC | Maps SCCmec deletion | ||
| Map14 | F-ATCATTGGCCTTTTCATTGG | Maps SCCmecdeletion | This study |
| R-CGATACTACATGCAGAAGTT | Maps SCCmec deletion | ||
| Map15 | F-CGCGTAAGCTTTCTTCATTC | Maps SCCmec deletion | This study |
| R-GGTACTTAAGTGGGTTAGTT | Maps SCCmec deletion | ||
| Map17 | F-CATCATTAGGAATCGCGAAT | Maps SCCmec deletion | This study |
| R-TGTGTATTACAGACCTGGTT | Maps SCCmec deletion | ||
| Map18 | F-TCCACCTTTATACTTCGTCA | Maps SCCmec deletion | This study |
| R-ATGTCGATGTGACTAAGGAC | Maps SCCmec deletion | ||
| Map16 | F-GTATCCGCTTGTTAAATGTG | Maps SCCmec deletion | This study |
| R-GACGAGTGAACTTAACCAAT | Maps SCCmec deletion | ||
| 16RFAN | ATTGGTTAAGTTCACTCGTC | 3503VR10 SCCmec for sequencing deletion site connection | This study |
| aac(6)-aph(2) | F-CCAAGAGCAATAAGGGCATACC | ref. 18 | |
| R-CACACTATCATAACCATCACCG | |||
| ant(4)-Ia | F-CTGCTAAATCGGTAGAAGC | ref. 18 | |
| R-CAGACCAATCAACATGGCACC | |||
| aph(3)-IIIa | F-CTGATCGAAAAATACCGCTGC | ref. 18 | |
| R-TCATACTCTTCCGAGCAAAGG |