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. 2017 Jan 3;13(1):e1006112. doi: 10.1371/journal.ppat.1006112

Fig 3. Maximum likelihood phylogenetic trees of partial HIV env sequences from paired CSF cellular pellets and PBMC sampled at baseline in 8 participants.

Fig 3

HIV DNA populations were compartmentalized in the CSF for 6 baseline samples. Monophyletic HIV DNA populations in the CSF (i.e. aLTR>0.9, see asterisks) were found in 2 participants who initiated ART during late (T0133 and T0156) and 3 who initiated ART during early infection (T0104, T0073 and T0430). Genetic scale distances of 0.01 number of nucleotide substitutions per site.