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. Author manuscript; available in PMC: 2017 Feb 18.
Published in final edited form as: J Hum Genet. 2016 Aug 18;62(2):175–184. doi: 10.1038/jhg.2016.103

Table 3.

Selected LAMA1 results with TNFα receptor 2 protein levels (LOD>1 and/or P-value <0.01)

SNP Chr Position Chip N MAF LOD P-value Beta Value Standard Error Variance
rs4395154 18 6942805 OmniExpress 820 0.46 4.47 0.25 0.016 0.014 0.001
rs2016639 18 6943264 OmniExpress 821 0.431 3.46 0.2 −0.018 0.014 0.002
rs17439137 18 6951060 OmniExpress 821 0.235 1.07 0.77 −0.005 0.016 0
rs8086875 18 6951710 Omni1S 821 0.208 1.15 0.36 0.015 0.017 0.0008
rs8088218 18 6951971 Omni1S 820 0.21 1.62 0.32 0.017 0.017 0.001
rs12454596 18 6953989 OmniExpress 821 0.446 1.85 0.73 0.005 0.014 0.0002
rs949215 18 6955676 OmniExpress 821 0.25 1.18 0.96 0.001 0.016 0
rs28569884 18 6956111 Omni1S 821 0.058 1.06 5.94E-04 −0.098 0.029 0.015
rs509497 18 6957193 OmniExpress 821 0.393 1.29 0.04 0.028 0.014 0.005
rs633691 18 6967089 OmniExpress 821 0.419 3.18 0.085 0.024 0.014 0.0044
rs11873205 18 6979621 Omni1S 818 0.13 1.54 0.0072 −0.055 0.021 0.0113
rs538815 18 6982443 OmniExpress 821 0.202 1.69 0.5 −0.011 0.017 0.0003
rs619106 18 7011413 OmniExpress 821 0.291 0.03 0.042 −0.032 0.015 0.009
rs67268419 18 7013648 Omni1S 820 0.077 1.74 0.74 −0.009 0.025 0.0006
rs541928 18 7034932 Omni1S 821 0.153 2.05 0.49 0.013 0.019 0
rs7240767 18 7070642 OmniExpress 821 0.468 0 0.029 −0.03 0.014 0.0058
rs7228959 18 7076464 OmniExpress 821 0.49 0 0.044 −0.027 0.014 0.0047
rs16951199 18 7080135 OmniExpress 815 0.068 0 0.017 −0.064 0.027 0.0081
rs11081298 18 7085706 Omni1S 820 0.466 2.91 0.94 −0.001 0.014 0.0001
rs12606163 18 7096977 OmniExpress 807 0.485 4.78 0.11 0.022 0.014 0.0038
rs972038 18 7102036 Omni1S 816 0.171 0.07 0.046 −0.036 0.018 0.0103
rs12955222 18 7102427 OmniExpress 821 0.482 4.53 0.13 0.02 0.013 0.0038
rs12956744 18 7102706 Omni1S 821 0.407 6.49 0.03 0.03 0.014 0.0071
rs12959835 18 7103146 Omni1S 820 0.408 6.38 0.034 0.029 0.014 0.0068
rs1462780 18 7105988 OmniExpress 820 0.019 0 0.034 −0.103 0.049 0.0072
rs34433741 18 7108999 Omni1S 820 0.415 6.07 0.089 0.023 0.014 0.0031
rs4798533 18 7109571 Omni1S 819 0.282 1.52 0.82 −0.003 0.015 0.0002
rs12454984 18 7109652 Omni1S 821 0.404 6.02 0.15 0.02 0.014 0.0019
rs984355 18 7114212 OmniExpress 821 0.217 2.55 0.36 0.016 0.017 0

Boldface indicates LOD scores > 3 or p-values < 0.05.