Table 3.
Selected LAMA1 results with TNFα receptor 2 protein levels (LOD>1 and/or P-value <0.01)
SNP | Chr | Position | Chip | N | MAF | LOD | P-value | Beta Value | Standard Error | Variance |
---|---|---|---|---|---|---|---|---|---|---|
rs4395154 | 18 | 6942805 | OmniExpress | 820 | 0.46 | 4.47 | 0.25 | 0.016 | 0.014 | 0.001 |
rs2016639 | 18 | 6943264 | OmniExpress | 821 | 0.431 | 3.46 | 0.2 | −0.018 | 0.014 | 0.002 |
rs17439137 | 18 | 6951060 | OmniExpress | 821 | 0.235 | 1.07 | 0.77 | −0.005 | 0.016 | 0 |
rs8086875 | 18 | 6951710 | Omni1S | 821 | 0.208 | 1.15 | 0.36 | 0.015 | 0.017 | 0.0008 |
rs8088218 | 18 | 6951971 | Omni1S | 820 | 0.21 | 1.62 | 0.32 | 0.017 | 0.017 | 0.001 |
rs12454596 | 18 | 6953989 | OmniExpress | 821 | 0.446 | 1.85 | 0.73 | 0.005 | 0.014 | 0.0002 |
rs949215 | 18 | 6955676 | OmniExpress | 821 | 0.25 | 1.18 | 0.96 | 0.001 | 0.016 | 0 |
rs28569884 | 18 | 6956111 | Omni1S | 821 | 0.058 | 1.06 | 5.94E-04 | −0.098 | 0.029 | 0.015 |
rs509497 | 18 | 6957193 | OmniExpress | 821 | 0.393 | 1.29 | 0.04 | 0.028 | 0.014 | 0.005 |
rs633691 | 18 | 6967089 | OmniExpress | 821 | 0.419 | 3.18 | 0.085 | 0.024 | 0.014 | 0.0044 |
rs11873205 | 18 | 6979621 | Omni1S | 818 | 0.13 | 1.54 | 0.0072 | −0.055 | 0.021 | 0.0113 |
rs538815 | 18 | 6982443 | OmniExpress | 821 | 0.202 | 1.69 | 0.5 | −0.011 | 0.017 | 0.0003 |
rs619106 | 18 | 7011413 | OmniExpress | 821 | 0.291 | 0.03 | 0.042 | −0.032 | 0.015 | 0.009 |
rs67268419 | 18 | 7013648 | Omni1S | 820 | 0.077 | 1.74 | 0.74 | −0.009 | 0.025 | 0.0006 |
rs541928 | 18 | 7034932 | Omni1S | 821 | 0.153 | 2.05 | 0.49 | 0.013 | 0.019 | 0 |
rs7240767 | 18 | 7070642 | OmniExpress | 821 | 0.468 | 0 | 0.029 | −0.03 | 0.014 | 0.0058 |
rs7228959 | 18 | 7076464 | OmniExpress | 821 | 0.49 | 0 | 0.044 | −0.027 | 0.014 | 0.0047 |
rs16951199 | 18 | 7080135 | OmniExpress | 815 | 0.068 | 0 | 0.017 | −0.064 | 0.027 | 0.0081 |
rs11081298 | 18 | 7085706 | Omni1S | 820 | 0.466 | 2.91 | 0.94 | −0.001 | 0.014 | 0.0001 |
rs12606163 | 18 | 7096977 | OmniExpress | 807 | 0.485 | 4.78 | 0.11 | 0.022 | 0.014 | 0.0038 |
rs972038 | 18 | 7102036 | Omni1S | 816 | 0.171 | 0.07 | 0.046 | −0.036 | 0.018 | 0.0103 |
rs12955222 | 18 | 7102427 | OmniExpress | 821 | 0.482 | 4.53 | 0.13 | 0.02 | 0.013 | 0.0038 |
rs12956744 | 18 | 7102706 | Omni1S | 821 | 0.407 | 6.49 | 0.03 | 0.03 | 0.014 | 0.0071 |
rs12959835 | 18 | 7103146 | Omni1S | 820 | 0.408 | 6.38 | 0.034 | 0.029 | 0.014 | 0.0068 |
rs1462780 | 18 | 7105988 | OmniExpress | 820 | 0.019 | 0 | 0.034 | −0.103 | 0.049 | 0.0072 |
rs34433741 | 18 | 7108999 | Omni1S | 820 | 0.415 | 6.07 | 0.089 | 0.023 | 0.014 | 0.0031 |
rs4798533 | 18 | 7109571 | Omni1S | 819 | 0.282 | 1.52 | 0.82 | −0.003 | 0.015 | 0.0002 |
rs12454984 | 18 | 7109652 | Omni1S | 821 | 0.404 | 6.02 | 0.15 | 0.02 | 0.014 | 0.0019 |
rs984355 | 18 | 7114212 | OmniExpress | 821 | 0.217 | 2.55 | 0.36 | 0.016 | 0.017 | 0 |
Boldface indicates LOD scores > 3 or p-values < 0.05.