Table 1.
GO classification of common up-regulated genes in both XT and ZF
| Gene Ontology term | The number of Genes | -log10 (P value)* |
|---|---|---|
| Cellular component | ||
| thylakoid part (GO: 0044436) | 26 | 9.16494 |
| photosynthetic membrane (GO: 0034357) | 22 | 6.8697 |
| chloroplast thylakoid (GO: 0009534) | 24 | 6.6383 |
| plastid thylakoid (GO: 0031976) | 24 | 6.6253 |
| thylakoid membrane (GO: 0042651) | 21 | 6.3925 |
| Thylakoid (GO: 0009579) | 27 | 6.1649 |
| organelle subcompartment (GO: 0031984) | 24 | 6.1524 |
| plastid thylakoid membrane (GO: 0055035) | 19 | 5.4935 |
| plastid part (GO: 0044435) | 47 | 5.3468 |
| thylakoid lumen (GO: 0031977) | 10 | 5.1169 |
| chloroplast thylakoid membrane (GO: 0009535) | 18 | 4.8125 |
| photosystem (GO: 0009521) | 9 | 4.8125 |
| chloroplast part (GO: 0044434) | 45 | 4.7011 |
| chloroplast (GO: 0009507) | 67 | 4.1675 |
| photosystem II (GO: 0009523) | 6 | 2.7447 |
| plastid (GO: 0009536) | 98 | 2.6253 |
| photosystem I (GO: 0009522) | 5 | 2.0477 |
| envelope (GO: 0031975) | 4 | 1.3821 |
| Molecular function | ||
| oxidoreductase activity (GO: 0016491) | 50 | 2.9031 |
| peptidase inhibitor activity (GO: 0030414) | 6 | 2.7447 |
| peptidase regulator activity (GO: 0061134) | 6 | 2.7447 |
| tetrapyrrole binding (GO: 0046906) | 18 | 2.5031 |
| inositol-1,3,4-trisphosphate 6-kinase activity (GO: 0052725) | 4 | 1.9119 |
| inositol tetrakisphosphate kinase activity (GO: 0051765) | 4 | 1.7755 |
| inositol trisphosphate kinase activity (GO: 0051766) | 4 | 1.7113 |
| heme binding (GO: 0020037) | 16 | 1.600 |
| omega-3 fatty acid desaturase activity (GO: 0042389) | 2 | 1.3372 |
| Biological process | ||
| photosynthesis (GO: 0015979) | 16 | 4.0996 |
| oxidation-reduction process (GO: 0055114) | 57 | 3.7959 |
| photosynthesis, light reaction (GO: 0019684) | 10 | 3.0132 |
| negative regulation of peptidase activity (GO: 0010466) | 6 | 2.3615 |
| regulation of peptidase activity (GO: 0052547) | 6 | 2.3615 |
| negative regulation of hydrolase activity (GO: 0051346) | 6 | 2.2660 |
| regulation of proteolysis (GO: 0030162) | 6 | 1.9618 |
| regulation of protein processing (GO: 0070613) | 6 | 1.96182 |
| regulation of protein metabolic process (GO: 0051246) | 15 | 1.3416 |
*P values of all GO terms are lower than 0.05. Conversely, −log10 (P value) values of all GO terms are greater than 1.3010, that is, the greater -log10 (P value) value, the better significance