Fig. 3.

Maximum credibility tree based on 59 archival and 16 contemporaneous red muntjac samples, spanning across red muntjacs combined distribution. All branches are supported with BPP > 0.9 except the ones marked with * where BPP > 0.8. This phylogenetic relationship was reconstructed with BEAST and the root age was constrained to 3 Mya as suggested by the divergence dating analyses. Clades of similar sequences have been collapsed and the detailed information about all individuals can be found in Table S1