Table 10.
Proportion of structural variants in LINE regions, compared with the genome as a whole and other regions
| Sample set | Non-L1_exon | L1 | Fold_change | t test p value |
|---|---|---|---|---|
| Deletions | 0.003538 | |||
| FAM_HOL | 0.000805 | 0.003322 | 4.124097 | |
| FAM_JER | 0.000139 | 0.000818 | 5.893840 | |
| POP_HOL | 0.002868 | 0.005747 | 2.003659 | |
| POP_JER | 0.001654 | 0.004282 | 2.588642 | |
| VAL_SV | 0.001384 | 0.004992 | 3.608023 | |
| Insertions | 0.185507 | |||
| FAM_HOL | 0.000001 | 0.000000 | 0.000000 | |
| FAM_JER | 0.000000 | 0.000000 | 0.000000 | |
| POP_HOL | 0.000249 | 0.000196 | 0.787844 | |
| POP_JER | 0.000000 | 0.000000 | 0.000000 | |
| VAL_SV | 0.000003 | 0.000003 | 1.080158 | |
| Inversions | 0.260667 | |||
| FAM_HOL | 0.000084 | 0.000040 | 0.479628 | |
| FAM_JER | 0.000010 | 0.000005 | 0.484786 | |
| POP_HOL | 0.005262 | 0.005435 | 1.032979 | |
| POP_JER | 0.000395 | 0.000437 | 1.106285 | |
| VAL_SV | 0.000152 | 0.000123 | 0.810684 | |
| Duplications | 0.082899 | |||
| FAM_HOL | 0.000122 | 0.000115 | 0.945850 | |
| FAM_JER | 0.000016 | 0.000033 | 2.100240 | |
| POP_HOL | 0.001611 | 0.002144 | 1.331104 | |
| POP_JER | 0.000828 | 0.001416 | 1.710535 | |
| VAL_SV | 0.000148 | 0.000164 | 1.103813 |
Fold change is equal to the percentage of the genome that harbors SV in the L1 regions divided by the percentage of the genome that harbors SV in the other regions