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. 2017 Jan 25;49:13. doi: 10.1186/s12711-017-0286-5

Table 10.

Proportion of structural variants in LINE regions, compared with the genome as a whole and other regions

Sample set Non-L1_exon L1 Fold_change t test p value
Deletions 0.003538
 FAM_HOL 0.000805 0.003322 4.124097
 FAM_JER 0.000139 0.000818 5.893840
 POP_HOL 0.002868 0.005747 2.003659
 POP_JER 0.001654 0.004282 2.588642
 VAL_SV 0.001384 0.004992 3.608023
Insertions 0.185507
 FAM_HOL 0.000001 0.000000 0.000000
 FAM_JER 0.000000 0.000000 0.000000
 POP_HOL 0.000249 0.000196 0.787844
 POP_JER 0.000000 0.000000 0.000000
 VAL_SV 0.000003 0.000003 1.080158
Inversions 0.260667
 FAM_HOL 0.000084 0.000040 0.479628
 FAM_JER 0.000010 0.000005 0.484786
 POP_HOL 0.005262 0.005435 1.032979
 POP_JER 0.000395 0.000437 1.106285
 VAL_SV 0.000152 0.000123 0.810684
Duplications 0.082899
 FAM_HOL 0.000122 0.000115 0.945850
 FAM_JER 0.000016 0.000033 2.100240
 POP_HOL 0.001611 0.002144 1.331104
 POP_JER 0.000828 0.001416 1.710535
 VAL_SV 0.000148 0.000164 1.103813

Fold change is equal to the percentage of the genome that harbors SV in the L1 regions divided by the percentage of the genome that harbors SV in the other regions