Table 5.
Comparison of the TWICE_SEQ and MERGE sets for 21 twice-sequenced individuals
| Animal ID | MERGE | OVERLAP | SHARE | Overlap% | Coverage |
|---|---|---|---|---|---|
| HOLFRAM268 | 845 | 27 | 15 | 55.56 | 21.32 |
| HOLFRAM266 | 1896 | 1635 | 1041 | 63.67 | 14.25 |
| HOLNLDM273 | 1796 | 1913 | 1176 | 65.48 | 15.34 |
| HOLNLDM270 | 1677 | 2069 | 1136 | 67.74 | 15.51 |
| HOLDNKM259 | 1682 | 2001 | 1146 | 68.13 | 15.74 |
| HOLUSAM277 | 2219 | 2398 | 1524 | 68.68 | 17.62 |
| HOLNLDM272 | 2039 | 2520 | 1410 | 69.15 | 16.91 |
| HOLDEUM255 | 1881 | 2168 | 1341 | 71.29 | 17.02 |
| HOLUSAM280 | 2000 | 2200 | 1440 | 72.00 | 17.55 |
| HOLNLDM274 | 690 | 1585 | 497 | 72.03 | 14.78 |
| HOLDNKM262 | 980 | 2537 | 714 | 72.86 | 17.4 |
| HOLDNKM261 | 1969 | 1867 | 1361 | 72.90 | 15.84 |
| HOLUSAM278 | 1011 | 3067 | 761 | 75.27 | 18.96 |
| HOLDNKM260 | 2557 | 1305 | 986 | 75.56 | 16.93 |
| HOLDEUM256 | 1059 | 2730 | 806 | 76.11 | 17.48 |
| HOLSWEM275 | 1214 | 2882 | 926 | 76.28 | 18.86 |
| HOLUSAM279 | 1331 | 2581 | 1036 | 77.84 | 16.75 |
| HOLDNKM263 | 1159 | 2697 | 916 | 79.03 | 17.02 |
| HOLDEUM257 | 1356 | 3626 | 1087 | 80.16 | 21.53 |
| HOLCANM253 | 1600 | 257 | 255 | 99.22 | 42.71 |
| HOLUSAM276 | 845 | 132 | 131 | 99.24 | 16.89 |
MERGE and OVERLAP represent the counts of SV that were observed by using the merge and overlap method, respectively. SHARE represents the counts of SV that were found by both methods. The overlap percentage is equal to SHARE counts divided by the smaller number found in the merge and overlap method. Coverage is the sum of the coverages for each twice-sequenced individual