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. 2017 Jan 25;49:13. doi: 10.1186/s12711-017-0286-5

Table 8.

Expanded gene families in the bovine genome with structural variations

Gene Chr Start bp End bp SV type SV sets
DEFB122* Chr13 61,561,981 61,578,126 DEL POP_HOL;TWICE_SEQ;POP_JER
DEFB122 Chr13 61,561,981 61,578,126 INS POP_HOL
DEFB122A Chr13 61,562,053 61,566,096 DEL POP_HOL;POP_JER
DEFB122A Chr13 61,562,053 61,566,096 INS POP_HOL
DEFB125 Chr13 61,371,090 61,377,521 INV POP_HOL
DEFB125A Chr13 61,391,541 61,402,435 INV POP_HOL
DEFB112 Chr23 22,381,986 22,387,950 DEL TWICE_SEQ
DEFB Chr27 5,457,175 5,465,032 INS POP_HOL
DEFB1 Chr27 5,483,406 5,539,158 INS POP_HOL
DEFB1 Chr27 5,448,917 5,465,074 INS POP_HOL
DEFB1* Chr27 6,223,483 6,225,131 DEL FAM_HOL;TWICE_SEQ;POP_JER
DEFB52 Chr27 5,134,073 5,276,254 DUP POP_JER
DEFB52 Chr27 5,134,073 5,276,254 INS POP_HOL
DEFB52 Chr27 5,134,073 5,276,254 DEL POP_JER
DEFB33 Chr27 5,245,806 5,351,104 INS POP_HOL
CATHL2* Chr22 52,189,557 52,191,061 DEL POP_HOL;POP_JER
PAG16 Chr29 38,952,100 39,189,606 DEL TWICE_SEQ
PAG16 Chr29 38,952,100 39,189,606 INS POP_HOL
PAG16 Chr29 38,952,100 39,189,606 INV POP_HOL
PAG18 Chr29 38,428,102 38,437,106 DEL TWICE_SEQ
LOC751562 Chr23 34,386,963 34,491,996 DEL FAM_HOL;POP_HOL;TWICE_SEQ
LOC751562 Chr23 34,386,963 34,491,996 DUP POP_HOL;POP_JER
PRP6 Chr23 34,479,662 34,491,996 DEL POP_HOL;TWICE_SEQ

* Genes that are completely spanned by SV