Table 8.
Expanded gene families in the bovine genome with structural variations
| Gene | Chr | Start bp | End bp | SV type | SV sets |
|---|---|---|---|---|---|
| DEFB122* | Chr13 | 61,561,981 | 61,578,126 | DEL | POP_HOL;TWICE_SEQ;POP_JER |
| DEFB122 | Chr13 | 61,561,981 | 61,578,126 | INS | POP_HOL |
| DEFB122A | Chr13 | 61,562,053 | 61,566,096 | DEL | POP_HOL;POP_JER |
| DEFB122A | Chr13 | 61,562,053 | 61,566,096 | INS | POP_HOL |
| DEFB125 | Chr13 | 61,371,090 | 61,377,521 | INV | POP_HOL |
| DEFB125A | Chr13 | 61,391,541 | 61,402,435 | INV | POP_HOL |
| DEFB112 | Chr23 | 22,381,986 | 22,387,950 | DEL | TWICE_SEQ |
| DEFB | Chr27 | 5,457,175 | 5,465,032 | INS | POP_HOL |
| DEFB1 | Chr27 | 5,483,406 | 5,539,158 | INS | POP_HOL |
| DEFB1 | Chr27 | 5,448,917 | 5,465,074 | INS | POP_HOL |
| DEFB1* | Chr27 | 6,223,483 | 6,225,131 | DEL | FAM_HOL;TWICE_SEQ;POP_JER |
| DEFB52 | Chr27 | 5,134,073 | 5,276,254 | DUP | POP_JER |
| DEFB52 | Chr27 | 5,134,073 | 5,276,254 | INS | POP_HOL |
| DEFB52 | Chr27 | 5,134,073 | 5,276,254 | DEL | POP_JER |
| DEFB33 | Chr27 | 5,245,806 | 5,351,104 | INS | POP_HOL |
| CATHL2* | Chr22 | 52,189,557 | 52,191,061 | DEL | POP_HOL;POP_JER |
| PAG16 | Chr29 | 38,952,100 | 39,189,606 | DEL | TWICE_SEQ |
| PAG16 | Chr29 | 38,952,100 | 39,189,606 | INS | POP_HOL |
| PAG16 | Chr29 | 38,952,100 | 39,189,606 | INV | POP_HOL |
| PAG18 | Chr29 | 38,428,102 | 38,437,106 | DEL | TWICE_SEQ |
| LOC751562 | Chr23 | 34,386,963 | 34,491,996 | DEL | FAM_HOL;POP_HOL;TWICE_SEQ |
| LOC751562 | Chr23 | 34,386,963 | 34,491,996 | DUP | POP_HOL;POP_JER |
| PRP6 | Chr23 | 34,479,662 | 34,491,996 | DEL | POP_HOL;TWICE_SEQ |
* Genes that are completely spanned by SV