Table 4. Top 20 up-regulated genes in the goats with type III brush hair traits.

Gene name	Gene ID	Chromosome ID	Length	High-Quality RPKM	Non High-Quality RPKM	log2Fold Change
LECT2	102180390	chr 7	668	42.0333	0.0746	8.64
apolipoprotein A-I	102179867	chr 15	1,323	188.0913	0.4143	8.32
FGG	102184178	chr 17	1,522	22.4539	0.0654	7.92
HBS1L	102178359	chr 9	816	18.4728	0.0610	7.74
VCL	102188740	chr 28	1,588	4.6669	0.0157	7.71
MAP3K1	102187530	chr 20	1,444	8.7731	0.0345	7.49
FGB	102184929	chr 17	1,989	38.5539	0.1753	7.28
DUSP6	102172327	chr 5	302	29.8185	0.1650	6.99
PAN3	102188509	chr 12	670	12.5222	0.0743	6.89
Warm-temperature-acclimation-related 65-kDa protein	100049497	chr 2	1,392	5.9871	0.0358	6.89
F2	102185018	chr 15	1,944	8.3007	0.0513	6.84
TNNT3	100861247	chr 29	777	10.2939	0.0641	6.83
WNK1	102172797	chr 5	796	9.9779	0.0626	6.82
PDZRN3	102169341	chr 22	1,117	9.3889	0.0669	6.63
ZNF470	102189614	chr 18	1,094	12.2704	0.0911	6.57
DUSP1	102180080	chr 20	428	31.1028	0.2329	6.56
TSNAX	102190379	chr 28	1,040	10.6487	0.0958	6.29
RHOT1	102179131	chr 19	1,178	9.2113	0.0846	6.27
PRPF38B	102187281	chr 3	395	23.8599	0.2523	6.06
40S ribosomal protein S14	102186113	chr 7	502	18.4399	0.1985	6.04

Note: In the NCBI database, the warm-temperature-acclimation-related 65-kDa protein gene is not annotated in Capra hircus (goat). Using BLAST, we found the wap65-like gene (100049497) in Scombermorus niphonius (Japanese Spanish mackerel), which is 97% identical to the warm-temperature-acclimation-related 65-kDa protein gene(S1 File). Therefore, we used the gene and chromosome IDs of wap65-like in Table 4.