. Author manuscript; available in PMC: 2018 Jan 25.

Published in final edited form as: Cell Syst. 2016 Dec 1;4(1):31–45.e6. doi: 10.1016/j.cels.2016.10.018

Table 1.

Candidate Gene Identification Using PC1 Tumor Gene Expression Data. Also see Fig. S3.

Gene Symbol	Entrez Gene ID	Transcript Start (Mb)	Transcript End (Mb)	cis-eQTL Analysis						Association with Distant Metastasis Free Suvival		Human Ortholog
Gene Symbol	Entrez Gene ID	Transcript Start (Mb)	Transcript End (Mb)	eQTL	eQTL Position	LOD Score	Percent Variance Explained	P-Value	FDR	P-Value	FDR	Human Ortholog
1700029J07Rik	69479	45.95	45.98	rs6283436	44.99	6.69	25.01	6.79×10⁻⁵	0.002	3.58×10⁻⁴	0.009	*C4orf47*
Ufsp2	192169	45.98	46.00	rs33292257	46.33	3.98	15.73	0.011	0.076	0.024	0.048	*UFSP2*
Cfap97	66756	46.15	46.20	rs33528193	46.53	3.48	13.91	0.025	0.079	0.002	0.013	CFAP97
Acsl1	14081	46.47	46.54		46.53	3.50	14.00	0.024	0.079	0.013	0.029	ACSL1
Cenpu	71876	46.55	46.58		46.53	3.66	14.58	0.018	0.079	0.001	0.009	CENPU
Casp3	12367	46.62	46.64	rs33292257	46.33	3.65	14.54	0.019	0.079	0.013	0.029	CASP3
Trappc11	320714	47.49	47.53	rs33504741	47.60	3.27	13.12	0.035	0.089	0.001	0.009	TRAPPC11
Ing2	69260	47.67	47.68	rs33504741	47.60	3.81	15.14	0.014	0.079	0.001	0.009	*ING2*
Rwdd4a	192174	47.53	47.55	rs30948998	48.33	5.68	21.68	4.73×10⁻⁴	0.007	0.005	0.017	*RWDD4*
Cdkn2aip	70925	47.71	47.71	UNC14692700	48.71	4.04	15.97	0.009	0.068	0.003	0.014	*CDKN2AIP*
Tenm3	23965	48.23	48.84	rs30967527	48.42	3.57	14.23	0.021	0.079	0.002	0.013	*TENM3*