Table 1.

Statistical significance of top two subnetworks. The table shows the q value of top two subnetworks identified using each scoring scheme according to the permuted genotype and PPI for WTCCC-T2D

Scoring method	Size	q value in	q value in
		permuted genotype	permuted PPI networks
NODE-BASED	187	0.37	0.45
	190	0.70	0.92
LINEAR COMBINATION	41	0.46	0.09
	17	0.79	0.52
MOBAS	14	0.04	< 0.01
	14	0.05	<0.01