Table 3.
The contingency between the individual genes and subnetworks identified on two independent psoriasis datasets
| (a) | Significant in WTCCC | Not Significant in WTCCC | |
|---|---|---|---|
| Significant in GAIN | 11 | 1 | |
| Not significant in GAIN | 28 | 2927 | |
| (b) | In significant WTCCC subnetwork | Not in significant WTCCC subnetwork | |
| Significant in GAIN | 2 | 10 | |
| Not significant in GAIN | 13 | 2942 | |
| (c) | Significant in WTCCC | Not Significant in WTCCC | |
| In significant GAIN subnetwork | 6 | 15 | |
| Not in significant GAIN subnetwork | 33 | 2913 | |
| (d) | In significant WTCCC subnetwork | Not in significant WTCCC subnetwork | |
| In significant GAIN subnetwork | 13 | 8 | |
| Not in significant GAIN subnetwork | 2 | 2944 |
The p values of the contingency of each table according to chi-square test are (a) 1.72E-175, (b) 3.39E-15, (c) 4.32E-28, and (d) 0