TABLE 1.
Organism and sample type | No. of TP | No. of FP | No. of TN | No. of FN | Sensitivity,b % (CI) | Specificity,c % (CI) | PPV, % (CI) | NPV, % (CI) |
---|---|---|---|---|---|---|---|---|
STEC | ||||||||
Fresh, prospective | 4 | 8e | 1,070 | 0 | 100 (40–100) | 99.3 (98–100) | 33.3 (11–65) | 100 (99–100) |
Frozen, retrospective | 51 | 0 | 33 | 4f | 92.7 (82–98) | 100 (87–100) | 100 (91–100) | 89.2 (74–96) |
Total | 55 | 8 | 1,103 | 4 | 93.2 (83–98) | 99.3 (99–100) | 87.3 (76–94) | 99.6 (99–100) |
O:157d | ||||||||
Fresh, prospective | 0 | 2g | 4 | 0 | ND | 66.7 (24–94) | 0 (0–80) | 100 (99–100) |
Frozen, retrospective | 22 | 0 | 24 | 1h | 95.7 (76–100) | 100 (83–100) | 100 (82–100) | 96.0 (78–100) |
Total | 22 | 2 | 28 | 1 | 95.7 (76–100) | 93.3 (76–99) | 91.7 (72–99) | 69.6 (80–100) |
A total of 1,170 specimens were tested. Abbreviations: TP, true positives; FP, false positives; TN, true negatives; FN, false negatives; PPV, positive predictive value; NPV, negative predictive value; CI, 95% confidence interval.
Positive percent agreement for frozen, retrospective specimens.
Negative percent agreement for frozen, retrospective specimens.
O:157 result is reported only if specimens were positive for STEC.
Preserved stool specimens and enrichment broths were subjected to bidirectional sequence analysis (LOD ∼ 104 CFU/ml). Sequence for stx1, stx2, or both was confirmed in all 8 samples.
All 4 specimens were positive by alternative molecular IVD test but negative by bidirectional sequence analysis.
Both specimens were reported as positive for E. coli O:157 by an alternative molecular IVD test.
Specimen was reported as positive for serotype E. coli O:157 by an alternative molecular IVD test.