Table 2.
Genes of known association with melanoma
| Clone ID | Chromosomal Location | Name | AVERAGE | t-test (p2-value) | |||
| RCC | MEL | Other | RCC vs MEL | MEL vs Other | |||
| Cluster a | |||||||
| 2569910 | Xp11.2 | MAGED2 | -0.22 | 0.4 | -0.28 | 7.10E-03 | 8.00E-07 |
| 316397 | Xp11.2 | MAGED2 | -0.24 | 0.41 | -0.29 | 5.60E-04 | 3.00E-07 |
| P24478 | Xp11.2 | MAGED2 | -0.21 | 0.31 | -0.22 | 5.10E-03 | 1.00E-06 |
| Cluster d | |||||||
| 1735474 | Xq26 | MAGEC1 | 0.03 | 0.25 | -0.26 | 3.40E-02 | 6.80E-06 |
| 131595 | Xq28 | MAGEA10 | -0.03 | 0.28 | -0.24 | 6.20E-02 | 1.80E-04 |
| 1505360 | Xq28 | MAGEA2 | -0.88 | 0.94 | -0.76 | 6.00E-12 | 2.00E-10 |
| Cluster e | |||||||
| 781233 | 2p23.3 | POMC | -0.03 | 0.17 | -0.15 | 2.20E-01 | 1.40E-05 |
| Cluster g | |||||||
| 897956 | 22q11.22 | PRAME | -0.62 | 1.33 | -1.05 | 1.60E-06 | 1.00E-18 |
| 853789 | 9p23 | TYRP1 | -0.82 | 0.59 | -0.3 | 7.70E-06 | 8.00E-04 |
| 768344 | 9p23 | TYRP1 | -0.7 | 0.8 | -0.61 | 1.60E-07 | 1.80E-06 |
| 40056 | 15q23 | CSPG4 | -0.32 | 0.69 | -0.53 | 2.20E-04 | 2.70E-09 |
| P07338 | n.a. | CSPG4 | -0.63 | 0.78 | -0.61 | 8.50E-05 | 5.70E-09 |
| 2447688 | 11q23.3 | MCAM | 0.21 | 0.69 | -0.6 | 8.70E-02 | 3.40E-09 |
| 1585510 | 3q28-q29 | MFI2 (p97) | -0.48 | 0.59 | -0.44 | 1.10E-03 | 5.70E-07 |
| Cluster i | |||||||
| P30563 | n.a. | CD63 | -0.66 | 0.7 | -0.44 | 8.20E-08 | 1.90E-09 |
| 1631546 | Xq28 | MAGEA6 | -0.55 | 0.35 | -0.22 | 1.30E-08 | 5.60E-04 |
| 291448 | 12q13-q1 | SILV (gp100) | -1.31 | 1.55 | -1.16 | 4.90E-16 | 5.00E-15 |
| 271985 | 11q14-q2 || TYR | Tyrosinase | -1.37 | 1.73 | -1.38 | 6.30E-18 | 2.90E-18 |
| 272327 | 9p24.1 | Melan-A | -0.76 | 1.19 | -0.95 | 2.40E-08 | 1.80E-16 |
| 269124 | 9p24.1 | Melan-A | -0.65 | 1.21 | -0.99 | 5.30E-09 | 2.70E-16 |