Table 1. List of novel variants and loci identified in this study.

Associated Trait	Marker Name	Chr	Pos (hg19)	Locus/Nearest Gene	Coded allele	Non-Dcoded allele	MAF (WGS)	Beta (Joint)	SE(Joint)	P-value (Joint)	N (Joint)	Primary/Secondary Signal	Variant annotation
PCV	rs10008637	4	77414144	SHROOM3	C	T	0.463	0.032	0.004	1.08E-14	124,890	Primary	intronic
PLT	rs2546979	5	159595612	FABP6	C	G	0.291	-0.049	0.004	1.81E-31	134,858	Primary	intergenic
WBC	rs3130725	6	29118747	ZNF311	G	T	0.131	-0.008	0.001	2.70E-26	121,238	Primary	intergenic
WBC	rs113164910	6	32427005	HLA-DRA	AAC	A	0.327	0.008	0.000	4.19E-54	122,412	Primary	intergenic
PLT	rs61750929	9	91495135	S1PR3	T	C	0.059	-0.081	0.008	2.20E-21	134,858	Primary	intergenic
PLT	rs150813342	9	135864513	GFI1B	T	C	0.004	-0.408	0.026	4.73E-57	111,278	Primary	synonymous
PLT	rs113373353	12	65007682	RASSF3	T	C	0.111	0.055	0.006	1.76E-17	134,858	Primary	intronic
PLT	rs575505283	15	43703277	TP53BP1	AT	A	0.014	-0.160	0.019	6.89E-17	121,073	Primary	intronic
PLT	rs1801689	17	64210580	APOH	C	A	0.033	0.106	0.012	3.92E-19	134,858	Primary	non-synonymous
PLT	rs75570992	22	50570755	TRABD-MOV10L1	C	G	0.072	0.096	0.008	7.75E-32	134,377	Primary	intronic
PLT	rs41315846	1	247712303	GCSAML	C	T	0.479	0.048	0.004	3.03E-34	134,858	Secondary	intronic
PLT	rs78565404	3	184090242	THPO	T	C	0.057	0.136	0.009	1.65E-50	134,858	Secondary	3' UTR
UricAcid	rs56223908	4	9918492	SLC2A9	C	A	0.080	0.137	0.018	9.21E-15	26,727	Secondary	intronic
WBC	rs2442735	6	31346653	HLA-B	G	A	0.140	-0.010	0.001	1.93E-46	121,528	Secondary	intergenic
MCV	rs112233623	6	41924998	CCND3	T	C	0.011	0.723	0.049	5.65E-49	107,036	Secondary	intronic
HDL	rs3824477	9	107588328	ABCA1	A	G	0.026	0.122	0.016	1.43E-13	56,306	Secondary	intronic
MCH	rs117747069	16	170076	NPRL3	C	G	0.037	-0.172	0.024	4.20E-13	119,687	Secondary	intronic