Table 5.
Significantly enriched pathways of DEGs between different light qualities.
| Pathway ID | Pathway | DEGs with pathway annotation | Q-value (<0.05) | UP-regulated DEGs | Down-regulated DEGs |
|---|---|---|---|---|---|
| W-vs-B | |||||
| Total DEGs with pathway annotation | 407 (100%) | ||||
| ko00511 | Other glycan degradation | 12 (2.95%) | 0.04457 | 9 | 3 |
| ko00860 | Porphyrin and chlorophyll metabolism | 8 (1.97%) | 0.04457 | 8 | 0 |
| W-vs-G | |||||
| Total DEGs with pathway annotation | 994 (100%) | ||||
| ko03010 | Ribosome | 57 (5.73%) | 8.09E-09 | 48 | 9 |
| ko04712 | Circadian rhythm - plant | 28 (2.82%) | 2.52E-07 | 14 | 14 |
| ko00710 | Carbon fixation in photosynthetic organisms | 16 (1.61%) | 4.01E-03 | 6 | 10 |
| ko00940 | Phenylpropanoid biosynthesis | 45 (4.53%) | 8.31E-03 | 25 | 20 |
| ko00500 | Starch and sucrose metabolism | 43 (4.33%) | 1.32E-02 | 29 | 14 |
| ko00260 | Glycine, serine and threonine metabolism | 15 (1.51%) | 3.36E-02 | 9 | 6 |
| W-vs-R | |||||
| Total DEGs with pathway annotation | 451 (100%) | ||||
| ko04712 | Circadian rhythm - plant | 17 (3.77%) | 1.34E-05 | 8 | 9 |