Table 3.
Details on QTLs identified for TSWV, ELS, and LLS resistance in the T-population.
| S No. | QTL name | Year | Month of Observation | Linkage group | Marker interval | Left marker Physical position | Right marker physical position | LOD value | Phenotypic variation explained (%) | Additive effect (a0) |
|---|---|---|---|---|---|---|---|---|---|---|
| TOMATO SPOTTED WILT VIRUS (TSWV) | ||||||||||
| 1 | qTSW_T10_A04_1 | 2010 | July | A04 | GM1062–TC23B15 | Aradu.A04_121088160 | – | 6.36 | 14.41 | −0.53 |
| 2 | qTSW_T10_A04_2 | 2010 | August | A04 | GM1062–TC23B15 | Aradu.A04_121088160 | – | 3.02 | 6.74 | −0.28 |
| 3 | qTSW_T10_B02_1 | 2010 | August | B02 | GM2808–Seq1B09-2 | Araip.B02_103261801 | Aradu.A02_20947839 | 3 | 6.82 | 0.27 |
| 4 | qTSW_T10_B02_2 | 2010 | July | B02 | RI1F06–Seq4E08 | Aradu.A02_77240043 | Araip.B02_64583082 | 4.06 | 8.95 | 0.47 |
| 5 | qTSW_T11_A08 | 2011 | July | A08 | IPAHM468–GM1628 | Aradu.A09_3145922 | Aradu.A08_45498715 | 3.35 | 7.15 | 0.24 |
| 6 | qTSW_T11_A09 | 2011 | July | A09 | AHS1750–AHGS0695 | Araip.B07_57472323 | Aradu.A09_111384841 | 3.51 | 9.65 | 0.31 |
| 7 | qTSW_T13_A01 | 2013 | July | A01 | TC23F04–TC23F04-1 | Araip.B10_96894035 | Araip.B10_96894035 | 3.27 | 9.29 | −0.28 |
| 8 | qTSW_T13_A04_1 | 2013 | July | A04 | TC3H02–Seq8E12-2 | Aradu.A01_102382032 | Aradu.A01_104139693 | 3.4 | 7.59 | 0.26 |
| 9 | qTSW_T13_A04_2 | 2013 | July | A04 | TC23C08-1–TC23C08b-2 | Araip.B01_118165090 | Araip.B01_118165090 | 3.14 | 8.67 | 0.27 |
| 10 | qTSW_T13_B04 | 2013 | July | B04 | GM1992–TC28B07 | Aradu.A01_88729509 | Aradu.A04_2024488 | 3.17 | 8.99 | −0.27 |
| 11 | qTSW_T13_B10 | 2013 | July | B10 | GM2165–GM1742 | Araip.B10_1799837 | Araip.B10_4784882 | 3 | 7.35 | −0.25 |
| EARLY LEAF SPOT (ELS) | ||||||||||
| 12 | qELS_T10_A03_2 | 2010 | July | A03 | GA27–GM2388 | Araip.B03_19993020 | Araip.B03_22414726 | 3.33 | 11.5 | −0.23 |
| 13 | qELS_T11_A05 | 2011 | August | A05 | TC40D04–GM1878 | Aradu.A05_86235178 | Araip.B05_6635016 | 4.39 | 11.23 | −0.21 |
| 14 | qELS_T11_A06 | 2011 | August | A06 | Seq18G9-1–TC28E09 | Araip.B01_123278331 | Araip.B06_2116158 | 5.93 | 12.61 | −0.22 |
| 15 | qELS_T11_B06 | 2011 | August | B06 | AHGS0590–TC38D06-1 | Araip.B04_83644293 | Araip.B02_3444489 | 3.33 | 10.63 | −0.2 |
| 16 | qELS_T13_A04 | 2013 | July | A04 | S113–TC5A07 | – | Aradu.A04_11614688 | 3.25 | 6.26 | −0.15 |
| 17 | qELS_T13_A05 | 2013 | July | A05 | TC40D04–GM1878 | Aradu.A05_86235178 | Araip.B05_6635016 | 4.93 | 12.71 | −0.21 |
| 18 | qELS_T13_A06 | 2013 | July | A06 | Seq18G9-1–TC28E09 | Araip.B01_123278331 | Araip.B06_2116158 | 5.76 | 13.2 | −0.21 |
| 19 | qELS_T13_A07 | 2013 | July | A07 | TC19B07–GM1076-3 | Aradu.A07_26534041 | Araip.B06_39385375 | 3.19 | 6.67 | −0.13 |
| 20 | qELS_T13_B01 | 2013 | July | B01 | Ah3–TC1A08 | Araip.B01_118165092 | Araip.B01_114116578 | 3.35 | 7.02 | −0.13 |
| LATE LEAF SPOT (LLS) | ||||||||||
| 21 | qLLS_T11_A03 | 2011 | September | A03 | PM238-2–TC1E06 | Aradu.A03_22168867 | Aradu.A03_10132301 | 4.08 | 9.11 | −0.16 |
| 22 | qLLS_T11_A04 | 2011 | September | A04 | TC7G10–EM142 | Aradu.A04_3479736 | Aradu.A04_121074477 | 3.26 | 6.63 | −0.18 |
| 23 | qLLS_T11_A05_1 | 2011 | September | A05 | PM65–GNB703 | Araip.B05_18606218 | Aradu.A09_93893154 | 3.38 | 8.63 | −0.18 |
| 24 | qLLS_T11_A05_2 | 2011 | September | A05 | TC6E01–GNB353 | Aradu.A05_33061631 | Aradu.A05_17795698 | 4.55 | 9.55 | −0.19 |
| 25 | qLLS_T11_A06_1 | 2011 | September | A06 | GM1489–GM2337 | Aradu.A06_1258634 | Araip.B06_18837557 | 4.32 | 15.12 | −0.19 |
| 26 | qLLS_T11_A06_2 | 2011 | September | A06 | IPAHM659–TC42A02 | Aradu.A06_7370126 | Aradu.A06_2062118 | 3.56 | 9.61 | −0.19 |
| 27 | qLLS_T11_B04 | 2011 | September | B04 | IPAHM108-2–IPAHM695 | Aradu.A04_111588972 | Aradu.A04_108179281 | 3.24 | 9.33 | 0.16 |
| 28 | qLLS_T12_A02 | 2012 | September | A02 | GA8–GNB1121 | Aradu.A05_23339934 | Araip.B02_58499596 | 3.04 | 7.02 | 0.34 |
| 29 | qLLS_T12_A05_1 | 2012 | September | A05 | PM179–PM65 | – | Araip.B05_18606218 | 3.59 | 8.42 | −0.36 |
| 30 | qLLS_T12_A05_2 | 2012 | September | A05 | PM179–PM65 | – | Araip.B05_18606218 | 3.23 | 9.16 | −0.36 |
| 31 | qLLS_T13_A03_1 | 2013 | September | A03 | GM2528–GM2027 | Araip.B03_126672393 | Araip.B03_124049435 | 3.7 | 8.78 | −0.33 |
| 32 | qLLS_T13_A03_2 | 2013 | August | A03 | GM2027–GA26 | Araip.B03_124049435 | Aradu.A05_109137871 | 3.11 | 6.4 | −0.21 |
| 33 | qLLS_T13_A05_1 | 2013 | September | A05 | PM179–GNB703 | – | Aradu.A09_93893154 | 5.03 | 12.35 | −0.39 |
| 34 | qLLS_T13_A05_2 | 2013 | August | A05 | PM65–GNB703 | Araip.B05_18606218 | Aradu.A09_93893154 | 4.82 | 15.13 | −0.27 |
| 35 | qLLS_T13_A05_3 | 2013 | August | A05 | TC6E01 –IPAHM356 | Aradu.A05_33061631 | Aradu.A05_19076425 | 3.8 | 8.9 | −0.26 |
| 36 | qLLS_T13_A05_4 | 2013 | August | A05 | GNB827–Ah426 | Aradu.A05_37578655 | – | 3.72 | 9.27 | −0.27 |
| 37 | qLLS_T13_A05_5 | 2013 | August | A05 | Ah426–GA65 | – | Araip.B05_16912303 | 3.61 | 9.74 | −0.3 |
| 38 | qLLS_T13_A05_6 | 2013 | August | A05 | GM1049–GNB464 | Aradu.A05_62322817 | Aradu.A05_85047929 | 3.04 | 7.41 | −0.26 |
| 39 | qLLS_T13_A05_7 | 2013 | August | A05 | GNB464–GA44 | Aradu.A05_85047929 | Araip.B03_128254123 | 5.26 | 15.55 | −0.36 |
| 40 | qLLS_T13_A07_1 | 2013 | September | A07 | TC38F01–GM1986-2 | Aradu.A07_73062983 | Aradu.A07_53236894 | 3.55 | 8.05 | −0.32 |
| 41 | qLLS_T13_A07_2 | 2013 | August | A07 | TC38F01–GM1986-2 | Aradu.A07_73062983 | Aradu.A07_53236894 | 3.82 | 12.82 | −0.3 |
| 42 | qLLS_T13_B08 | 2013 | September | B08 | PM505–GM1960 | Araip.B07_79877009 | – | 3.69 | 9.15 | −0.33 |