Table 2.
The top 20 ranked unigenes (based on expression level) in the TS sample and the corresponding unigenes in the US sample
| Unigene ID | FPKM | Log2FC | Swissprot annotation | |
|---|---|---|---|---|
| US | TS | |||
| CL1448Contig1* | 4098.9 | 6615.6 | 0.6906 | Putative uncharacterized protein ART2 |
| con2.comp50853_c1_seq1* | 2359.4 | 5061.6 | 1.1012 | Ribulose bisphosphate carboxylase |
| con2.comp55521_c1_seq2* | 2683.5 | 2716.9 | 0.0178 | Chlorophyll a-b binding protein |
| CL19733Contig1 | 62.02 | 2388.1 | 5.2670 | Aquaporin TIP1-1 |
| d2.comp66814_c0_seq1 | 405.58 | 2025.4 | 2.3201 | Homocysteine methyltransferase |
| con2.comp46855_c0_seq1 | 563.36 | 2014.8 | 1.8385 | Chlorophyll a-b binding protein |
| con2.comp56741_c0_seq1 | 272.93 | 1970.4 | 2.8519 | Adenosyl homocysteinase sahh |
| CL21Contig8 | 281.14 | 1902.9 | 2.7588 | Pistil-specific extensin-like |
| d2.comp52786_c0_seq1 | 96.70 | 1769.6 | 4.1938 | Osmotin-like protein osml13 |
| CL14756Contig1 | 30.91 | 1628.7 | 5.7195 | 14 kda proline-rich protein |
| con2.comp43560_c0_seq1* | 1158.0 | 1462.4 | 0.3367 | Lipid-transfer protein dir1 |
| d2.comp33048_c0_seq1 | 766.12 | 1450.9 | 0.9213 | Chlorophyll a-b binding protein |
| con2.comp58109_c0_seq5 | 49.71 | 1442.6 | 4.8590 | Proline-rich protein |
| CL10800Contig1 | 414.22 | 1422.8 | 1.7803 | Isoflavone reductase-like protein |
| d2.comp65178_c0_seq2* | 802.5 | 1416.2 | 0.8195 | Chlorophyll a-b binding |
| d2.comp61695_c0_seq1* | 1033.1 | 1370.1 | 0.4073 | Glutamine synthetase cytosolic isozyme |
| con2.comp53151_c0_seq8 | 252.52 | 1350.1 | 2.4186 | Aquaporin TIP1-1 |
| d2.comp59904_c0_seq3 | 129.21 | 1349.1 | 3.3842 | Proline-rich protein |
| d2.comp54069_c0_seq1 | 413.02 | 1343.1 | 1.7013 | Peroxidase 12 |
| CL68Contig3 | 68.81 | 1341.1 | 4.2847 | Chlorophyll a-b binding protein |
Note: US Untreated Sample, TS Treated Sample. FPKM represents unigene expression level that is normalized by FPKM (Fragments per Kilobase per Million mapped reads) approach. The six unigenes denoted with an asterisk (*) indicated highly expressed unigenes in both untreated and treated samples. The unigenes in bold are differentiated expressed genes (DEGs) between US and TS sample