Table 3.

The top 20 ranked most differentially expressed unigenes between normal and flooding conditions

Unigene ID	Log2FC	FDR	Swissprot annotation
d2.comp62123_c2_seq4	13.94	5.99E-20	Chlorophyll a-b binding protein
d2.comp52108_c0_seq2	13.78	9.43E-20	Auxin-induced in root cultures protein
d2.comp54965_c0_seq2	13.09	5.46E-18	Proline-rich protein 4
d2.comp53053_c0_seq1	12.78	2.03E-17	Kirola
d2.comp66621_c0_seq4	12.71	2.94E-17	Protein da1-related 1
d2.comp60426_c0_seq5	12.68	3.27E-17	Benzyl alcohol 0-benzoyltransferase
d2.comp57055_c0_seq2	12.16	7.80E-16	mitochondrial chaperone bcs1
d2.comp61187_c1_seq1	11.68	1.84E-14	Glyceraldehyde 3-phosphate dehydrogenase chloroplastic
d2.comp56332_c0_seq2	11.58	3.11E-14	Heat shock cognate 70 kda protein 2
d2.comp58962_c0_seq1	11.57	3.22E-14	Cluminal-binding protein 4
d2.comp61381_c0_seq1	11.42	6.45E-14	Heat shock cognate protein 80
d2.comp63783_c0_seq1	11.37	9.00E-14	L-ascorbate oxidase homolog
d2.comp62781_c0_seq1	11.29	1.42E-13	Probable ferric reduction oxidase 1
d2.comp57757_c0_seq1	11.28	1.45E-13	40s ribosomal protein s2-2
d2.comp62067_c0_seq1	11.27	1.50E-13	Carrier protein chloroplastic
d2.comp59687_c0_seq1	11.12	3.92E-13	Uncharacterized protein At1g08160
d2.comp54780_c1_seq1	11.11	4.24E-13	Elongation factor 1-alpha
d2.comp57273_c0_seq1	11.03	6.61E-13	Chlorophyll a-b binding protein
d2.comp54437_c2_seq1	11.02	6.61E-13	Peroxidase 27
d2.comp55364_c0_seq2	11.00	7.07E-13	Ribulose bisphosphate carboxylase

Note: Log₂FC was estimated by the difference between Log₂(FPKM of TS sample) and Log₂(FPKM of US sample). FDR: p value corrected by false discovery rate at 5%