Table 1.

Immune/Inflammatory gene profile

Cytokines
Chemokines: CCL1, CCL11, CCL13, CCL16, CCL17, CCL18, CCL19, CCL2, CCL20, CCL21, CCL22, CCL23, CCL24, CCL25, CCL26, CCL27, CCL28, CCL3, CCL3L1, CCL4, CCL4L1, CCL5, CCL7, CCL8, CKLF, CX3CL1, CXCL1, CXCL10, CXCL11, CXCL12, CXCL13, CXCL14, CXCL2, CXCL3, CXCL5, CXCL6, CXCL9, CYP26B1, IL13, IL8, PF4V1, PPBP, PXMP2, XCL1.
Other Cytokines: AREG, BMP1, BMP2, BMP3, BMP7, CAST, CD40LG, CER1, CKLFSF1, CKLFSF2, CLC, CSF1, CSF2, CSF3, CTF1, CXCL16, EBI3, ECGF1, EDA, EPO, ERBB2, ERBB2IP, FAM3B, FASLG, FGF10, FGF12, FIGF, FLT3LG, GDF2, GDF3, GDF5, GDF6, GDF8, GDF9, GLMN, GPI, GREM1, GREM2, GRN, IFNA1, IFNA14, IFNA2, IFNA4, IFNA8, IFNB1, IFNE1, IFNG, IFNK, IFNW1, IFNWP2, IK, IL10, IL11, IL12A, IL12B, IL15, IL16, IL17, IL17B, IL17C, IL17D, IL17E, IL17F, IL18, IL19, IL1A, IL1B, IL1F10, IL1F5, IL1F6, IL1F7, IL1F8, IL1F9, IL1RN, IL2, IL20, IL21, IL22, IL23A, IL24, IL26, IL27, IL28B, IL29, IL3, IL32, IL4, IL5, IL6, IL7, IL9, INHA, INHBA, INHBB, KITLG, LASS1, LEFTY1, LEFTY2, LIF, LTA, LTB, MDK, MIF, MUC4, NODAL, OSM, PBEF1, PDGFA, PDGFB, PRL, PTN, SCGB1A1, SCGB3A1, SCYE1, SDCBP, SECTM1, SIVA, SLCO1A2, SLURP1, SOCS2, SPP1, SPRED1, SRGAP1, THPO, TNF, TNFRSF11B, TNFSF10, TNFSF11, TNFSF13, TNFSF13B, TNFSF14, TNFSF15, TNFSF18, TNFSF4, TNFSF7, TNFSF8, TNFSF9, TRAP1, VEGF, VEGFB, YARS.
Cytokine Receptors: CNTFR, CSF2RA, CSF2RB, CSF3R, EBI3, EPOR, F3, GFRA1, GFRA2, GHR, IFNAR1, IFNAR2, IFNGR1, IFNGR2, IL10RA, IL10RB, IL11RA, IL12B, IL12RB1, IL12RB2, IL13RA1, IL13RA2, IL15RA, IL17R, IL17RB, IL18R1, IL1R1, IL1R2, IL1RAP, IL1RAPL2, IL1RL1, IL1RL2, IL20RA, IL21R, IL22RA1, IL22RA2, IL28RA, IL2RA, IL2RB, IL2RG, IL31RA, IL3RA, IL4R, IL5RA, IL6R, IL6ST, IL7R, IL8RA, IL8RB, IL9R, LEPR, LIFR, MPL, OSMR, PRLR, TTN.
Chemokine Receptors: BLR1, CCL13, CCR1, CCR10, CCR2, CCR3, CCR4, CCR5, CCR6, CCR7, CCR8, CCR9, CCRL1, CCRL2, CX3CR1, CXCR3, CXCR4, CXCR6, IL8RA, IL8RB, XCR1.
Cytokine Metabolism: APOA2, ASB1, AZU1, B7H3, CD28, CD4, CD80, CD86, EBI3, GLMN, IL10, IL12B, IL17F, IL18, IL21, IL27, IL4, INHA, INHBA, INHBB, IRF4, NALP12, PRG3, S100B, SFTPD, SIGIRR, SPN, TLR1, TLR3, TLR4, TLR6, TNFRSF7, TNFSF15.
Cytokine Production: APOA2, ASB1, AZU1, B7H3, CD28, CD4, CD80, CD86, EBI3, GLMN, IL10, IL12B, IL17F, IL18, IL21, IL27, IL4, INHA, INHBA, INHBB, INS, IRF4, NALP12, NFAM1, NOX5, PRG3, S100B, SAA2, SFTPD, SIGIRR, SPN, TLR1, TLR3, TLR4, TLR6, TNFRSF7.
Other Genes involved in Cytokine–Cytokine Receptor Interaction: ACVR1, ACVR1B, ACVR2, ACVR2B, AMH, AMHR2, BMPR1A, BMPR1B, BMPR2, CCR1, CD40, CRLF2, CSF1R, CXCR3, IL18RAP, IL23R, LEP, TGFB1, TGFB2, TGFB3, TGFBR1, TGFBR2, TNFRSF1A, TNFRSF1B, TNFRSF21, TNFRSF8, TNFRSF9, XCR1.
Acute-Phase Response: AHSG, APCS, APOL2, CEBPB, CRP, F2, F8, FN1, IL22, IL6, INS, ITIH4, LBP, PAP, REG-III, SAA2, SAA3P, SAA4, SERPINA1, SERPINA3, SERPINF2, SIGIRR, STAT3.
Inflammatory Response: ADORA1, AHSG, AIF1, ALOX5, ANXA1, APOA2, APOL3, ATRN, AZU1, BCL6, BDKRB1, BLNK, C3, C3AR1, C4A, CCL1, CCL11, CCL13, CCL16, CCL17, CCL18, CCL19, CCL2, CCL20, CCL21, CCL22, CCL23, CCL24, CCL25, CCL26, CCL3, CCL3L1, CCL4, CCL4L1, CCL5, CCL7, CCL8, CCR1, CCR2, CCR3, CCR4, CCR7, CD14, CD40, CD40LG, CD74, CD97, CEBPB, CHST1, CIAS1, CKLF, CRP, CX3CL1, CXCL1, CXCL10, CXCL11, CXCL12, CXCL13, CXCL14, CXCL16, CXCL2, CXCL3, CXCL5, CXCL6, CXCL9, CYBB, DOCK2, EPHX2, F11R, FOS, FPR1, GPR68, HDAC4, HDAC5, HDAC7A, HDAC9, HRH1, ICEBERG, IFNA2, IL10, IL10RB, IL13, IL17, IL17B, IL17C, IL17D, IL17E, IL17F, IL18RAP, IL1A, IL1B, IL1F10, IL1F5, IL1F6, IL1R1, IL1RAP, IL1RN, IL20, IL22, IL31RA, IL5, IL8, IL8RA, IL8RB, IL9, IRAK2, IRF7, ITCH, ITGAL, ITGB2, KNG1, LTA4H, LTB4R, LY64, LY75, LY86, LY96, MEFV, MGLL, MIF, MMP25, MYD88, NALP12, NCR3, NFAM1, NFATC3, NFATC4, NFE2L1, NFKB1, NFRKB, NFX1, NMI, NOS2A, NR3C1, OLR1, PAP, PARP4, PLA2G2D, PLA2G7, PRDX5, PREX1, PRG2, PRG3, PROCR, PROK2, PTAFR, PTGS2, PTPRA, PTX3, REG-III, RIPK2, S100A12, S100A8, SAA2, SCUBE1, SCYE1, SELE, SERPINA3, SFTPD, SN, SPACA3, SPP1, STAB1, SYK, TACR1, TIRAP, TLR1, TLR10, TLR2, TLR3, TLR4, TLR5, TLR6, TLR7, TLR8, TLR9, TNF, TNFAIP6, TOLLIP, TPST1, VPS45A, XCR1.
Humoral Immune Response: BATF, BCL2, BF, BLNK, C1R, C2, C3, C4A, CCL16, CCL18, CCL2, CCL20, CCL22, CCL3, CCL7, CCR2, CCR6, CCR7, CCRL2, CCRL2, CD1B, CD1C, CD22, CD28, CD40, CD53, CD58, CD74, CD86, CLC, CR1, CRLF1, CSF1R, CSF2RB, CXCR3, CYBB, EBI3, FADD, GPI, IL10, IL12A, IL12B, IL12RB1, IL13, IL18, IL1B, IL2, IL26, IL4, IL6, IL7, IL7R, IRF4, ITGB2, LTF, LY86, LY9, LY96, MAPK11, MAPK14, MCP, NFKB1, NR4A2, PAX5, POU2AF1, POU2F2, PTAFR, RFXANK, S100B, SERPING1, SFTPD, SLA2, TNFRSF7, XCL1, XCR1, YY1.