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. Author manuscript; available in PMC: 2018 Mar 1.
Published in final edited form as: Biol Psychiatry. 2016 Aug 26;81(5):411–423. doi: 10.1016/j.biopsych.2016.08.024

Table 1.

Microbiota changes in ASD patients, mouse models with behavioral abnormalities, and links to immune and GI abnormalities.

Subject Behavior Description Microbiota Immune GI Reference(s)
children
(43–84 mo)
regressive-
onset autism
Broad-spectrum
antibiotic use was
linked to chronic
diarrhea followed by
loss of language, play,
and social skills (n=11).
X X (50)
children regressive-
onset autism
ASD (n=13) children all
had GI symptoms
(diarrehea and
constipation) had more
clostridial species, and
significant amount of
non-spore-forming
anaerobes and
microaerophilic bacteria
compared to control
(n=8).
X X (42)
children autism ASD children had
elevated levels of
Clostridium boltea,
Clostridium group I and
XI.
X (43)
mice stress
response
GF mice have elevated
stress response,
reduced BDNF in
cortex and
hippocampus. GF
colonization with
Bifidobacterium infantis
reversed stress
response.
X (40)
children
(3–16 yo)
autism ASD patients (n=58)
had taken antibiotics
(34.5%), had GI
complaints (91.4%),
and were taking
probiotics/prebiotics
(53.4%). ASD patients
had higher Clostridium
clusters I and II
compared to control
(n=22).
X X (44)
children
(avg. 11–12 yo)
regressive-
autism (n=24)
non-
regressive
autism (n=32)
ASD patients (n=56)
used significantly more
antibiotics.
X (114)
mice visceral
hypersensitivity
Lactobacillus paracasei
NCC2461 normalized
visceral sensitivity.
X (115)
children
(6.1 +/− 2.2 yo)
autism ASD children (n=15)
had significantly higher
use of oral antibiotics
during first 12 mo of
life.
X (116)
rats depression
like behavior
Probiotic Bifidobacteria
infantis treatment did
not change behavior
but decreased IFNγ,
TNFα and IL-6
cytokines.
X X (117)
mice anxiety-like
behavior
Colonic inflammation
induced anxiety like
behavior, decreased
hippocampal BDNF
mRNA, and increased
circulating TNFα and
IFNγ. Probiotic
Bifidobacterium longum
restored behavior and
BDNF.
X X X (118)
rats depression-
like behavior
Probiotic
Bifidobacterium infantis
treatment in a maternal
separation stress
model normalized IL-6
levels, increased swim
behavior and reduced
immobility in forced
swim test, and restored
basal noradrenaline
levels in brainstem.
X (119)
rats visceral
hypersensitivity
Probiotic
Bifidobacterium infantis
35624 reduces visceral
pain.
X (120)
children
(2–13 yo)
Impaired
social,
language, and
verbal skills.
Repetitive
stereotypical
behaviors.
ASD patients (n=33)
had varying GI
symptoms. More
severe autism had
higher Desulfovibrio,
Bacteroides vulgatus,
and Bacteroidetes.
Firmicutes was higher
in control (n=15).
X X (121)
mice motor activity
and anxiety-
like behavior
GF mice have
increased motor activity
and decreased anxiety.
Changes in PSD-95
and synaptophysin
expression in striatum.
X (35)
mice anxiety- and
depression-
related
behaviors
Probiotic L. rhamnosus
treatment of mice in a
stress model reduced
stress and increased
GABA receptor
expression in prefrontal
cortex.
X (122)
mice anxiety-like
behavior
Chemical colitis mouse
model treated with
probiotic
(Bifidobacterium
longum) had
normalized anxiety like
behavior.
X X X (123)
rats and adults (avg 42
yo)
anxiety,
depression,
and stress
Probiotic (Lactobacillus
helveticus and
Bifidobacterium
longum) reduced
anxiety-like behavior in
rats and reduced
psychological stress in
patients.
X (124)
children
(onset 13.4–5.4 mo)
autism ASD patients with GI
symptoms (n=15) had a
decrease in
disaccharidases and
hexose transporters,
they also had
decreases in
Bacteroidetes, increase
in
Firmicutes/Bacteroidetes
ratio, and increase in
Betaproteobacteria
compared to patients
with only GI (n = 7).
X X (47)
mice stress-induced
corticosterone,
anxiety-, and
depression-
related
behavior
L. rhamnosus
increased cortical
GABA(B1b) receptor
expression, decreased
GABA(Aα2) expression
in prefrontal cortex and
amygdala, but
increased in
hippocampus. L.
rhamnosus reduced
stress, anxiety and
depression behavior.
X (122)
mice anxiety-like
behavior
Chronic colitis model
has increased anxiety.
Bifidobacterium longum
normalized behavior,
but no change in BDNF
expression.
X X (123)
adults (avg 42 yo) anxiety and
depression
Lactobacillus
helveticus R0052
and Bifidobacterium
longum R0175
decreased hospital
anxiety and depression.
n=10 treated.
X (125)
children
(2–18 yo)
autism,
Asperger’s
ASD children (n=58)
had GI symptoms
decreased fecal
SCFAs, lower levels of
Bifidobacterium and
higher levels of
Lactobacillus
X X (19)
children (avg 123 mo) autism ASD children (n=23)
had elevated fecal
SCFAs
X (126)
mice ASD-like
behaviors
MIA mice have
decreased GI barrier,
increased IL-6,
decreased
cytokine/chemokine,
and gut microbiota
dysbiosis, and autism-
related behaviors that
were restored following
colonization with B.
fragilis.
X X X (32)
mice social
preference
and repetitive
behaviors
GF mice had deficits in
social avoidance, social
novelty, social
investigation. GF mice
also had increased
repetitive self-
grooming.
X (22)
mice social
behavior
Maternal high fat diet
induced social deficits
in offspring are restored
following colonization
with Lactobacillus
reuteri
X X (29)