TABLE 1.
Comparison of nucleotide diversities among ORFs in SHFV- or KRCV-1-infected crab-eating macaquesa
| Comparison group | F value | P valueb | Significant ORFs |
|---|---|---|---|
| All SHFV-infected macaques | 46.20 (45.74) | <0.0001 (<0.0001) | 5a (5a) |
| All KRCV-1-infected macaques | 10.18 (10.65) | <0.0001 (<0.0001) | 2a′ and 4′ (2a′ and 4′) |
| KRCV-1-infected macaque 1 | 12.82 (11.35) | <0.0001 (<0.0001) | 2a′ and 4′ (2a′ and 4′) |
| KRCV-1-infected macaque 2 | 3.609 (2.873) | 0.0004 (0.0038) | 4′ (4′) |
| KRCV-1-infected macaque 3 | 13.42 (12.12) | <0.0001 (<0.0001) | 2a′, 3′ and 4′ (2a′, 3′ and 4′) |
| KRCV-1-infected macaque 4 | 2.012 (2.068) | 0.0454 (0.0394) | None (none) |
Data for all time points were combined for the individual crab-eating macaque analyses. For the “All KRCV-1” and “All SHFV” analyses, data for all time points for all macaques infected with either KRCV-1 or SHFV were combined for each respective analysis. The far-right column summarizes the results of pairwise comparisons using Tukey's multiple-comparison test as detailed in Tables S1 to S4 and S6. ORFs for which comparisons against all or most other ORFs were significantly different by Tukey's multiple-comparison test are listed. Values in parentheses indicate those derived from performing the same analysis on assemblies that were subsampled to 1,000× coverage.
Significance values are as follows: *, P < 0.05; **, P < 0.01; ***, P < 0.001; ****, P < 0.0001. ns, not significant.