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. Author manuscript; available in PMC: 2017 Sep 23.
Published in final edited form as: Chronobiol Int. 2016 Sep 23;33(10):1444–1454. doi: 10.1080/07420528.2016.1229673

Table 1.

Primer and probe sequences used in real-time RT-PCR.

Gene/GenBank# Primer/probe Sequences
Dio1
NM_021653.3
Forward 5′-CAGCTGACTTCCTCATCATTTACATT-3′
Reverse 5′–TTCGGTGCTGCCTGATGTC–3′
Probe 5′-FAM-TCACGCCACAGATGGATGGGCTTTT-TAMRA-3′
Dio2
NM_031720.3
Forward 5′–ACGCTGTGTCTGGAACAGCTT–3′
Reverse 5′–ATTGGACACGTGCACCACACT–3′
Probe 5′6–FAM–ACAGGTTAAATTGGGTGAAGATGCTCCCA–TAMRA–3′
Npas2
NM_001108214.2
Forward 5′–AAGCCTTCATTCCTCAGTAACGA–3′
Reverse 5′–GTCACAACAATGACGAAGCCA–3′
Probe 5′6–FAM–TCACCCAGCTGATGTTGGAGGCGT–TAMRA–3′
Nr1d1
NM_145775.1
Forward 5′–AGGTGACCCTGCTTAAGGCTG–3′
Reverse 5′–ACTGTCTGGTCCTTCACGTTGA–3′
Probe 5′6–FAM–CAAAGCGCACCATCAGCACCTCAAA–TAMRA–3′
Thra1
NM_001017960.1
Forward 5′–CAAGGTGGAGTGTGGGTCAGA–3′
Reverse 5′–ATGCTGCTTTTCAGGGGACAT–3′
Probe 5′6–FAM–AGGAGAACAGTGCCAGGTCACCAGATG–TAMRA–3′
Thra2
NM_001017960.1
Forward 5′–CGTCAACCACCGCAAACAC–3′
Reverse 5′–ATGCGGAGGTCAGTCACCTT–3′
Probe 5′6–FAM–CATTCCGCACTTCTGGCCCAAGC–TAMRA–3′
Thrb1
NM_012672.3
Forward 5′–ACCAGAGTGGTGGATTTCGC–3′
Reverse 5′–CCATGCAGCAGCCTTTGA–3′
Probe 5′6–FAM–AAGTTGCCCATGTTTTGTGAGCTGCC–TAMRA–3′