Table 1A. Frameshift analysis of coding microsatellites in MLH1-/- GI-derived tumors.
cMS Marker | |||||||||||||
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Sample | APC | Tmem60 | Senp6 | Phactr4 | Mdm2 | Mdc1 | Casc3 | SDCCAG1 | Rasal2 | Tcf7l2 | Bend5 | NKtr1 | Rfc3 |
# 1 | wt | wt/-1 | wt | -1 | wt | wt/-1 | wt | wt | wt | wt | wt | wt | wt/-1 |
# 2 | wt/-1 | wt/-1 | wt | wt | wt | wt | wt/-1 | wt | wt/-1 | wt | wt/-1 | wt | wt/-1 |
# 3 | wt/-1 | wt/-1 | wt | -1 | wt | wt/-1 | wt | wt | wt | wt | wt | wt | wt/-1 |
# 4 | wt/-1 | wt | -1 | wt | wt | wt | wt | wt | wt | wt | wt/-1 | wt | wt/-1 |
# 5* | wt | wt | wt | wt | wt | wt | wt | wt | wt | wt | wt | wt | wt/-1 |
# 6 | wt/-1 | wt | wt/-1 | wt | wt | wt | wt/-1 | wt | wt/-1 | wt | wt/-1 | wt | wt/-1 |
# 7 | wt | wt | wt/-1 | wt/-1 | wt | wt | wt | wt/-1 | wt | wt | wt | wt | wt/-1 |
# 8 | wt | wt/-1 | wt | wt/-1 | wt | wt | wt | wt | wt/-1 | wt | wt | wt | wt/-1 |
# 9 | wt | wt | wt | wt/-1 | neg. | wt | wt | wt | wt/-1 | wt | wt | wt/-1 | wt/-1 |
# 10 | wt | wt/-1 | wt/-1 | wt/-1 | wt | wt | wt | wt | wt/-1 | wt/-1 | wt | wt | wt/-1 |
# 11§ | wt | wt | wt/-1/-2 | wt/-1 | wt | wt | wt | wt | wt/-1 | wt/-1 | wt | wt | wt/-1 |
# 11+ | wt | wt | wt/-1 | wt | del | wt | wt | wt | wt/-1 | wt/-1 | wt | wt | wt/-1 |
# 12 | wt | wt/-1 | wt/-1 | wt/+1 | wt | wt | wt | wt | wt/-1 | wt | wt | wt | wt/-1 |
# 13 | wt | wt | wt/-1 | wt | wt | wt | wt | wt | wt/-1 | wt | wt | wt | wt/-1 |
# 14 | wt | wt | wt | wt | wt | wt | wt | wt | wt | wt | wt | wt | wt/-1 |
# 15 | wt/-1 | wt | wt | wt | wt | wt | wt | wt | wt | wt | wt | wt | wt/-1 |
# 16 | wt | wt | wt | wt/-1 | wt | wt | wt | wt/+1 | wt | wt | wt | wt | wt/-1 |
# 17 | wt/-1 | wt | wt | wt/-1 | wt | wt | wt | wt | wt | wt | wt | wt | wt/-1 |
# 18 | wt | wt | wt/-1 | wt | wt | wt | wt | wt | wt | wt | wt | wt | wt/-1 |
# 19 | wt/-1 | wt | wt | -1 | wt | wt | wt/-1 | wt | wt | wt | wt | wt | wt/-1 |
# 20 | wt | wt | wt | wt | wt | wt | wt | wt | wt | wt | wt | wt | wt/-1 |
frequency [n] | 7/21 | 6/21 | 9/21 | 11/21 | 2/21 | 2/21 | 3/21 | 2/21 | 9/21 | 3/21 | 3/21 | 1/21 | 21/21 |
frequency [%] | 33.3 | 28.6 | 42.9 | 52.4 | 9.5 | 9.5 | 14.3 | 9.5 | 42.9 | 14.3 | 14.3 | 4.8 | 100.0 |
– adenoma; § – duodenal; + – colonic; wt – wildtype; - – deletions; + – insertions; neg.- negative, no analyzable signal