Figure 2.

Predicted experimental outcomes for quantitative SeqChIP. Predicted full co-occupancy (A), no co-occupancy (B) and partial co-occupancy (C) values are expressed as functions of parameters X and Y, where X and Y represent fractions of A-DNA molecules that also contain B and fractions of B-DNA that also contain A, respectively. Note that SeqChIP order is not important for full co-occupancy or no co-occupancy (AB = BA), but is critical for cases of partial co-occupancy (AB ≠ BA).