Table 2.
Sequence Conservation of the Upstream CDS and the Longest ORF of Each RefSeq cDNA
| RefSeq ID | Upstream CDSa (%) | Longest ORFa (%) | Longest ORF RefSeq definition |
|---|---|---|---|
| NM_005770 | 100 | 94 | Small EDRK-rich factor 2 (SERF2) |
| NM_015532 | 95 | 89 | Glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (GRINL1A) |
| NM_016215 | 71 | 92 | EGF-like domain, multiple 7 (EGFL7) |
Each amino acid sequence was deduced from the corresponding nucleotide sequence region of each cDNA. The mouse orthologous regions were extracted from the cDNA data below.
NM_005770 [upstream CDS: NM_011354 (+19−+198); longest ORF: NM_011354 (+101−+397)].
NM_015532 [upstream CDS: AK051868 (+13−+267); longest ORF: AK051868 (+122−+1222)].
NM_016215 [upstream CDS: NM_198724 (+125−+367); longest ORF: NM_198724 (+294−+1130)].
a
Each value represents the rate of similar amino acid residues over the entire region in the alignment of the human protein sequence with that of its mouse ortholog using CLUSTAL W (http://www.ddbj.nig.ac.jp/E-mail/clustalw-j.html).