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. 2017 Jan 13;7:40419. doi: 10.1038/srep40419

Table 1. The data sets of protein-protein interaction used in this study.

Dataset name Source Dataset type Nb proteins Nb proteins with 3D models Nb pairs Nb pairs with 3D models (%)
Positive BRS Yu et al.32 Interacting 2245 1714 (76%) 5621 3467 (62%)
Negative random Yu et al.32 Non-interacting 2245 1714 (76%) 5621 3326 (59%)
Negative balanced Yu et al.32 Non-interacting 2245 1714 (76%) 5621 3445 (61%)
Positive BRS-direct Yu et al.32, BioGrid39 Interacting 1870 1413 (76%) 2923 1773 (61%)
Negative non-colocalized Yu et al.32, Uniprot50 Non-interacting 868 655 (75%) 909 531 (58%)
Positive KUPS KUPS35 Interacting 156 117 (76%) 126 67 (53%)
Negative GO KUPS35 Non-interacting 1112 753 (75%) 1498 793 (53%)
Positive Ito-core Trabuco et al.33, IntAct65 Interacting 783 595 (76%) 750 441 (59%)
Negative FNR reduction Trabuco33 Non-interacting 792 497 (76%) 749 435 (58%)