Table 3.
Metal Atoms Found in NYSGXRC Target Proteins and Annotations of Targets and Closely Related Genes
| Target ID | Metal | NMA | Target Annotation | Clusters of Orthologous groups | BLAST-PDB | Related Structure |
|---|---|---|---|---|---|---|
| T763 | Zn | 1.3 | AC: Q9PHR1 | Ev = 2e-95 | No closely related structure | — |
| Putative amidohydrolase | Metal-dependent amidase/aminoacylase/carboxypeptidase | |||||
| OS: Campylobacter jejuni | ||||||
| SIMILARITY-Peptidase Family M40. | ||||||
| T773 | Zn | 0.9 | AC: O34974 | Ev = e-144 | Ev = 7e-10 | |
| YTNJ | Coenzyme F420-dependent | Alkanesulfonate | PDB ID: 1NQK | |||
| OS: Bacillus subtilis | NS, N10-methylene | Monooxygenase. | Identity = 28% | |||
| SIMILARITY-Ntaa/Snaa/Soxa(Dsza) Family of Monooxygenases. | tetrahydromethanopterin reductase | Metal ions = no | ||||
| T788 | Zn | 4.6 | AC: Q9WYG6 | Ev = e-103 | Ev = 3e-06 | PDB ID: 1O57 |
| Orotate phosphoribosyltransferase | 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1, 7-dioic acid hydratase | Purine Operon | Identity = 24% | |||
| OS: Thermotoga maritima | Repressor of Bacillus Subtilis. | Metal ions = no | ||||
| SIMILARITY-Purine/pyrimidine phosphoribosyltransferase family. | ||||||
| T790 | Cu | 0.9 | AC: O06156 | Ev = 6e-57 | Ev = 3e-10 | PDB ID: 1IUJ |
| Hypothetical protein Rv3592 | Uncharacterized enzyme; polysaccharide synthesis | Tt1380 Protein | Identity = 39% | |||
| OS: Mycobacterium tuberculosis | Metal ions = Zn | |||||
| T797 | Zn | 0.7 | AC: P44321 | Ev = e-108 | Ev = 7e-67 | PDB ID: 1NKU |
| DNA-3-methyladenine glycosylase | 3-methyladenine DNA glycosylase | DNA/Glycosylase I | Identity = 62% | |||
| OS: Haemophilus influenzae | Metal ions = Zn | |||||
| T813 | Fe | 1.0 | AC: Q58465 | Ev = 2e-74 | There is no closely related structure | — |
| Hypothetical protein MJ1065 | Sialic acid synthase | |||||
| OS: Methanococcus jannaschii | ||||||
| T818 | Zn | 0.7 | AC: O34790 | Ev = e-128 | Ev = e-125 | PDB ID: 1VIZ |
| PcrB protein homolog | Predicted phosphate-binding enzymes, TIM-barrel fold | Hypothetical Protein. | Identity = 99% | |||
| OS: Bacillus subtilis | Metal ions = no | |||||
| T823 | Cu | 1.1 | AC: P24216 | Ev = e-124 | No closely related structure | — |
| Flagellar hook-associated protein 2 | Flagellar capping protein | |||||
| OS: Escherichia coli | ||||||
| T824 | Cu | 2.4 | AC: Q9PNP0 | Ev = 2e-24 | No closely related structure | — |
| Restriction modification enzyme | Type I restriction-modification system methyltransferase subunit | |||||
| OS: Campylobacter jejuni | ||||||
| T830 | Mn | 1.6 | AC: Q9K2H0 | Ev = 6e-18 | No closely related structure | — |
| Hypothetical protein | ADP-ribose pyrophosphatase | |||||
| OS: Streptococcus pneumoniae | ||||||
| SIMILARITY-Nudix Hydrolase | ||||||
| T834 | Ni | 0.8 | AC: Q9X034 | Ev = 1e-79 | Ev = 0.0 | PDB ID: 1P1M |
| Hypothetical protein TM0936 | Cytosine deaminase and related metal-dependent hydrolases | Hypothetical | Identity = 100% | |||
| OS: Thermotoga maritima | Protein Tm0936 | Metal ions = Ni | ||||
| SIMILARITY - Atz/Trz Family | ||||||
| T1403 | Zn | 1.0 | AC: Q9S3S2 | Ev = 8e-93 | No closely related structure | — |
| Beta lactamase regulatory protein homolog | Predicted pyrophosphatase | |||||
| OS: Vibrio cholerae | ||||||
| T1404 | Zn | 0.8 | AC: P33646 | Ev = e-148 | No closely related structure | — |
| MazG protein | Predicted pyrophosphatase | |||||
| OS: Escherichia coli | ||||||
| SIMILARITY-S. CACOI ORF in BLAB 3'Region | ||||||
| T1405 | Zn | 0.7 | AC: O33341 | Ev = e-180 | No closely related structure | — |
| Hypothetical protein Rv2859c | Predicted glutamine amidotransferases | |||||
| OS: Mycobacterium tuberculosis | ||||||
| T1407 | Ni | 1.0 | AC: P11549 | Ev = 1e-82 | Ev = 7e-32 | |
| Lactaldehyde reductase | Fucose permease | Alcohol | PDB ID: 1O2D | |||
| OS: Escherichia coli | Dehydrogenase, | Identity = 30% | ||||
| SIMILARITY-iron-containing alcohol dehydrogenase family. | Metal ions = 2Fe | |||||
| T1421 | Ni | 1.5 | AC: P09151 | Ev = e-170 | There is no closely related structure | — |
| 2-isopropylmalate synthase | Isopropylmalate/homocitrate/citram alate synthases | |||||
| OS: Escherichia coli | ||||||
| SIMILARITY-alpha-IPM synthetase |
(NMA) Number of Metal Atoms per protein molecule; (OS) Organism/Species; (AC) Accession number; (Ev) E-value.