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. 2016 Nov 29;205(2):539–549. doi: 10.1534/genetics.116.193961

Table 2. The usage of +4U (PU) in 100 nonpseudo and nonhypothetical UAA, UAG, and UGA-ending HEGs and LEGs, ranked by ITE, in 19 bacterial species, together with the species’ accession number and genomic GC content.

Species Name Accession GC% UAA UAG UGA
PU.HEG PU.LEG PU.HEG PU.LEG PU.HEG PU.LEG
Microcystis aeruginosa NC_010296 42.331 0.41 0.19 0.26 0.5 0.33 0.2
Bacillus anthracis NC_005945 35.379 0.77 0.24 0.34 0.26 0.31 0.21
Bacillus subtilis NC_000964 43.514 0.63 0.21 0.2 0.13 0.32 0.33
Staphylococcus aureus NC_002758 32.878 0.79 0.35 0.36 0.33 0.49 0.40
Listeria monocytogenes NC_003210 37.981 0.53 0.28 0.2 0.22 0.32 0.35
Streptococcus pyogenes NC_002737 38.512 0.59 0.23 0.31 0.28 0.52 0.45
Lactococcus lactis NC_002662 35.329 0.64 0.23 0.34 0.37 0.34 0.32
Deinococcus deserti NC_002937 63.388 0.17 0.10 0.10 0.12 0.14 0.18
Bacteroides thetaiotaomicron NC_004663 42.837 0.66 0.33 0.36 0.21 0.45 0.33
Escherichia coli NC_000913 50.791 0.62 0.3 0.42 0.27 0.7 0.39
Salmonella enterica NC_003197 52.222 0.57 0.35 0.36 0.27 0.6 0.35
Yersinia pestis NC_003143 47.636 0.63 0.35 0.39 0.31 0.66 0.45
Shewanella oneidensis NC_004347 45.961 0.7 0.29 0.32 0.27 0.43 0.36
Neisseria meningitidis NC_003112 51.528 0.52 0.14 0.32 0.28 0.56 0.25
Legionella pneumophila NC_002942 38.27 0.37 0.39 0.33 0.27 0.39 0.29
Acidithiobacillus ferrooxidans NC_011761 58.773 0.28 0.29 0.16 0.19 0.32 0.26
Campylobacter jejuni NC_002163 30.549 0.47 0.25 0.32 0.32 0.34 0.42
Desulfovibrio vulgaris NC_002937 63.388 0.18 0.2 0.18 0.2 0.27 0.22
Mycobacterium tuberculosis NC_000962 65.615 0.19 0.16 0.18 0.2 0.21 0.26

A value of 0.26 under UAA/PU.HEG means 26 genes out of 100 UAA-ending HEGs have +4U. Horizontal lines delineate major taxonomic groups corresponding to Figure 1. HEG, highly-expressed gene; LEG, lowly-expressed gene.

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