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. 2017 Feb 3;8:152. doi: 10.3389/fmicb.2017.00152

Table 3.

Most abundant OTUs and their closely related species found in the uppermost layer of the sediment incubated in laboratory.

Incubation day OTU No. Closest relative speciesa Similarity (%) Accession No. Phylum/Classb Relative abundance (%)c p-valued Putative functione
1 43060 Sulfurovum lithotrophicum 98 CP011308 Epsilonproteobacteria 14.4 ± 0.3 <0.001** SO, NR
42344 Sulfurimonas autotrophica 92 CP002505 Epsilonproteobacteria 9.7 ± 0.3 <0.001** Unknown
25387 Sulfurovum aggregans 96 AB889689 Epsilonproteobacteria 9.2 ± 0.4 <0.001** SO, NR
49085 Sulfurimonas sp. 0H30-7C-S 90 AB304903 Epsilonproteobacteria 2.9 ± 0.5 0.002** Unknown
27532 Sulfurimonas sp. MA01 95 AB930173 Epsilonproteobacteria 1.6 ± 0.6 0.04* Unknown
49878 Desulfobulbus elongatus 92 CP002364 Deltaproteobacteria 1.6 ± 0.0 0.005** Unknown
21731 Thiomicrospira psychrophila 100 AJ404732 Gammaproteobacteria 1.2 ± 0.2 0.001** SO
3 42344 Sulfurimonas autotrophica 92 CP002505 Epsilonproteobacteria 30.7 ± 6.4 0.001** Unknown
25387 Sulfurovum aggregans 96 AB889689 Epsilonproteobacteria 9.0 ± 3.4 0.01* SO, NR
43060 Sulfurovum lithotrophicum 98 CP011308 Epsilonproteobacteria 8.0 ± 2.1 0.005** SO, NR
49085 Sulfurimonas sp. 0H30-7C-S 90 AB304903 Epsilonproteobacteria 4.1 ± 0.8 0.003** Unknown
32337 Mariprofundus ferrooxydans 96 EF493244 Zetaproteobacteria 3.9 ± 0.2 <0.001** FeO
36501 Thiomicrospira crunogena 100 L40810 Gammaproteobacteria 3.7 ± 0.9 0.002** SO
30483 Sulfurimonas denitrificans 98 L40808 Epsilonproteobacteria 2.7 ± 1.1 0.02* SO, NR
14 45161 Thioalkalispira microaerophila 98 AF481118 Gammaproteobacteria 18.3 ± 1.9 <0.001** SO, NR
32337 Mariprofundus ferrooxydans 96 EF493244 Zetaproteobacteria 4.8 ± 0.8 <0.001** FeO
6816 Gallionella sp. PN013 97 HQ117915 Betaproteobacteria 4.0 ± 0.2 <0.001** FeO
42344 Sulfurimonas autotrophica 92 CP002505 Epsilonproteobacteria 3.9 ± 0.6 0.001** Unknown
6961 Dyella ginsengisoli 100 KC129050 Gammaproteobacteria 3.4 ± 2.1 0.05 ChemO
30483 Sulfurimonas denitrificans 98 L40808 Epsilonproteobacteria 3.1 ± 0.4 <0.001** SO, NR
16111 Thiohalophilus thiocyanatoxydans 96 DQ469584 Gammaproteobacteria 2.9 ± 0.5 0.001** SO, NR
57 45161 Thioalkalispira microaerophila 98 AF481118 Gammaproteobacteria 9.0 ± 1.7 0.001** SO, NR
24485 Streptomyces vitaminophilus 99 AB184589 Actinobacteria 8.1 ± 2.5 0.005** ChemO, NR
908 Salinispirillum marinum 93 KJ195687 Gammaproteobacteria 5.9 ± 1.7 0.004** Unknown
23047 Oleiagrimonas soli 98 JQ658406 Gammaproteobacteria 4.8 ± 1.2 0.002** ChemO, NR
30112 Thiohalophilus thiocyanatoxydans 92 DQ469584 Gammaproteobacteria 3.0 ± 1.2 0.01* Unknown
45198 Thiohalophilus thiocyanatoxydans 96 DQ469584 Gammaproteobacteria 2.6 ± 0.7 0.003** SO, NR
6961 Dyella ginsengisoli 100 KC129050 Gammaproteobacteria 2.4 ± 0.4 0.001** ChemO
a

The closely related species were assigned on BLAST in the DDBJ.

b

The OTUs were characterized phylogenetically by using the QIIME software.

c

The symbol “±” means the standard deviation of three replications.

d

p-values indicate whether the relative abundance of OTU was significantly high comparing with that in the deep layer:

*

p < 0.05,

**

p < 0.01.

e

The putative function of closely related species (only sequence similarities >95%). SO, sulfur oxidation; SR, sulfate reduction; FeO, Fe(II) oxidation; ChemO, chemoorganotrophy; NR, nitrate reduction.