Table 3.
Incubation day | OTU No. | Closest relative speciesa | Similarity (%) | Accession No. | Phylum/Classb | Relative abundance (%)c | p-valued | Putative functione |
---|---|---|---|---|---|---|---|---|
1 | 43060 | Sulfurovum lithotrophicum | 98 | CP011308 | Epsilonproteobacteria | 14.4 ± 0.3 | <0.001** | SO, NR |
42344 | Sulfurimonas autotrophica | 92 | CP002505 | Epsilonproteobacteria | 9.7 ± 0.3 | <0.001** | Unknown | |
25387 | Sulfurovum aggregans | 96 | AB889689 | Epsilonproteobacteria | 9.2 ± 0.4 | <0.001** | SO, NR | |
49085 | Sulfurimonas sp. 0H30-7C-S | 90 | AB304903 | Epsilonproteobacteria | 2.9 ± 0.5 | 0.002** | Unknown | |
27532 | Sulfurimonas sp. MA01 | 95 | AB930173 | Epsilonproteobacteria | 1.6 ± 0.6 | 0.04* | Unknown | |
49878 | Desulfobulbus elongatus | 92 | CP002364 | Deltaproteobacteria | 1.6 ± 0.0 | 0.005** | Unknown | |
21731 | Thiomicrospira psychrophila | 100 | AJ404732 | Gammaproteobacteria | 1.2 ± 0.2 | 0.001** | SO | |
3 | 42344 | Sulfurimonas autotrophica | 92 | CP002505 | Epsilonproteobacteria | 30.7 ± 6.4 | 0.001** | Unknown |
25387 | Sulfurovum aggregans | 96 | AB889689 | Epsilonproteobacteria | 9.0 ± 3.4 | 0.01* | SO, NR | |
43060 | Sulfurovum lithotrophicum | 98 | CP011308 | Epsilonproteobacteria | 8.0 ± 2.1 | 0.005** | SO, NR | |
49085 | Sulfurimonas sp. 0H30-7C-S | 90 | AB304903 | Epsilonproteobacteria | 4.1 ± 0.8 | 0.003** | Unknown | |
32337 | Mariprofundus ferrooxydans | 96 | EF493244 | Zetaproteobacteria | 3.9 ± 0.2 | <0.001** | FeO | |
36501 | Thiomicrospira crunogena | 100 | L40810 | Gammaproteobacteria | 3.7 ± 0.9 | 0.002** | SO | |
30483 | Sulfurimonas denitrificans | 98 | L40808 | Epsilonproteobacteria | 2.7 ± 1.1 | 0.02* | SO, NR | |
14 | 45161 | Thioalkalispira microaerophila | 98 | AF481118 | Gammaproteobacteria | 18.3 ± 1.9 | <0.001** | SO, NR |
32337 | Mariprofundus ferrooxydans | 96 | EF493244 | Zetaproteobacteria | 4.8 ± 0.8 | <0.001** | FeO | |
6816 | Gallionella sp. PN013 | 97 | HQ117915 | Betaproteobacteria | 4.0 ± 0.2 | <0.001** | FeO | |
42344 | Sulfurimonas autotrophica | 92 | CP002505 | Epsilonproteobacteria | 3.9 ± 0.6 | 0.001** | Unknown | |
6961 | Dyella ginsengisoli | 100 | KC129050 | Gammaproteobacteria | 3.4 ± 2.1 | 0.05 | ChemO | |
30483 | Sulfurimonas denitrificans | 98 | L40808 | Epsilonproteobacteria | 3.1 ± 0.4 | <0.001** | SO, NR | |
16111 | Thiohalophilus thiocyanatoxydans | 96 | DQ469584 | Gammaproteobacteria | 2.9 ± 0.5 | 0.001** | SO, NR | |
57 | 45161 | Thioalkalispira microaerophila | 98 | AF481118 | Gammaproteobacteria | 9.0 ± 1.7 | 0.001** | SO, NR |
24485 | Streptomyces vitaminophilus | 99 | AB184589 | Actinobacteria | 8.1 ± 2.5 | 0.005** | ChemO, NR | |
908 | Salinispirillum marinum | 93 | KJ195687 | Gammaproteobacteria | 5.9 ± 1.7 | 0.004** | Unknown | |
23047 | Oleiagrimonas soli | 98 | JQ658406 | Gammaproteobacteria | 4.8 ± 1.2 | 0.002** | ChemO, NR | |
30112 | Thiohalophilus thiocyanatoxydans | 92 | DQ469584 | Gammaproteobacteria | 3.0 ± 1.2 | 0.01* | Unknown | |
45198 | Thiohalophilus thiocyanatoxydans | 96 | DQ469584 | Gammaproteobacteria | 2.6 ± 0.7 | 0.003** | SO, NR | |
6961 | Dyella ginsengisoli | 100 | KC129050 | Gammaproteobacteria | 2.4 ± 0.4 | 0.001** | ChemO |
The closely related species were assigned on BLAST in the DDBJ.
The OTUs were characterized phylogenetically by using the QIIME software.
The symbol “±” means the standard deviation of three replications.
p-values indicate whether the relative abundance of OTU was significantly high comparing with that in the deep layer:
p < 0.05,
p < 0.01.
The putative function of closely related species (only sequence similarities >95%). SO, sulfur oxidation; SR, sulfate reduction; FeO, Fe(II) oxidation; ChemO, chemoorganotrophy; NR, nitrate reduction.