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. 2016 Jun 1;44(13):e120. doi: 10.1093/nar/gkw446

Figure 4.

Figure 4.

DNA shape is characterized differently from PWM (A) Change of goodness of fit (avg. wPGP) of DNA shape-based model predictions when binding sites of a specific TF were forced to use LLR rather than shape scores. (B) Visualization of kni binding sites correlation between shape scores and LLR. (C) Pearson correlations of binding sites for each of nine TF in this study and all TFs.