Table 2.
Average expected number of SNPs between a pair of genotypes based on Gossypium germplasm group
| G. hirsutum | G. hirsutum, improved | G. hirsutum, improved, US | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Group | Gossypium spp. | Overall | Improved | Wild | US | Other countries | Eastern | Mid-south | Plains | Western | N/A |
| Gossypium spp. | 7167.8 | ||||||||||
| G. hirsutum overall | 6866.0 | 6564.2 | |||||||||
| Improved | 6408.7 | 6107.0 | 5649.7 | ||||||||
| Wild | 7029.7 | 6727.9 | 6270.6 | 6891.5 | |||||||
| G. hirsutum, improved | |||||||||||
| US | 6334.5 | 6032.7 | 5575.5 | 6196.4 | 5501.2 | ||||||
| Other countries | 6441.7 | 6139.9 | 5682.7 | 6303.6 | 5608.5 | 5715.7 | |||||
| G. hirsutum, improved, US | |||||||||||
| Eastern | 6154.2 | 5852.5 | 5395.2 | 6016.1 | 5321.0 | 5428.2 | 5140.7 | ||||
| Mid-south | 5744.1 | 5442.3 | 4985.1 | 5606.0 | 4910.8 | 5018.1 | 4730.6 | 4320.4 | |||
| Plains | 6212.6 | 5910.9 | 5453.6 | 6074.5 | 5379.4 | 5486.6 | 5199.1 | 4789.0 | 5257.5 | ||
| Western | 5875.9 | 5574.1 | 5116.9 | 5737.8 | 5042.6 | 5149.8 | 4862.4 | 4452.2 | 4920.8 | 4584.0 | |
| N/A | 6350.6 | 6048.8 | 5591.5 | 6212.5 | 5517.3 | 5624.5 | 5337.0 | 4926.9 | 5395.5 | 5058.7 | 5533.4 |
Calculations were based on the average MAF (including monomorphic SNPs) for each group obtained from Table 1