. 2017 Feb 6;7:41845. doi: 10.1038/srep41845

Table 1. Marker distributions of SNP markers associated with the winter-spring morphotype split in B. napus, along with the most closely associated markers from deep sequencing for the winter-spring split.

Marker name	Chromosome	Position	winter allele		spring allele			located in gene	clear winter	clear spring	mixed	deletions
			winter pop	spring pop	winter pop	spring pop	−log(p)		clear winter	clear spring	mixed	deletions
			split markers						ww	ss	ws	00
Bn-A01-p4641747	chrA01	4261277	132	13	4	101	39.3	BnaA01g08820D
Bn-A01-p4641802	chrA01	4261332	132	13	4	101	39.3	BnaA01g08820D	136	102	12	3
Bn-A01-p4803773	chrA01	4413051	128	9	6	105	39.8
Bn-A02-p3207085	chrA02	695308	131	7	4	106	42.8
Bn-A02-p3208275	chrA02	700390	129	7	5	106	41.7
Bn-A02-p3295898	chrA02	786193	130	8	5	101	39.9	BnaA02g01700D	129	104	12	8
Bn-A02-p3297592	chrA02	787627	128	6	6	104	40.6	BnaA02g01700D
Bn-A02-p3299206	chrA02	789246	130	6	5	105	42.1	BnaA02g01710D
Bn-A02-p3300731	chrA02	790766	128	6	6	105	40.9	BnaA02g01710D
Bn-A02-p3302725	chrA02	792753	126	6	7	105	39.8	BnaA02g01710D
Bn-A02-p3361391	chrA02	849106	126	6	8	104	39.1	BnaA02g01860D
Bn-A02-p5907701	chrA02	3096806	136	12	1	99	41.9
Bn-A02-p5917045	chrA02	3104382	137	11	2	101	42.9		148	101	2	2
Bn-A03-p6576575	chrA03	5874703	126	3	9	111	42.6	BnaA03g12910D	129	113	9	1
Bn-A03-p6636780	chrA03	5928259	131	5	6	109	44.0		129	113	9	1
Bn-A03-p9836757	chrA03	9057095	128	8	7	103	39.1		136	110	na	7
Bn-A07-p15352802	chrA07	17269795	126	7	9	106	39.0	BnaA07g22720D	133	115	na	5
Bn-A09-p30805314	chrA09	28557636	125	4	9	107	40.2	BnaA09g40670D
Bn-A09-p30805387	chrA09	28557709	125	4	9	110	41.4	BnaA09g40670D
Bn-A09-p30887157	chrA09	28628531	131	11	5	103	39.9		129	101	19	4
Bn-A09-p30909393	chrA09	28655613	131	9	4	105	41.7	BnaA09g40920D
Bn-A09-p30918224	chrA09	28662308	131	13	4	101	38.9	BnaA09g40920D
Bn-A09-p30921980	chrA09	28664405	131	11	4	103	40.3	BnaA09g40940D
Bn-A10-p7357442	chrA10	9020292	128	7	9	106	39.8	BnaA10g10600D
Bn-A10-p7357555	chrA10	9020402	127	6	9	106	39.8	BnaA10g10600D	135	115	0	3
Bn-scaff_17109_2-p79906	chrA10	14916811	121	1	17	111	38.9	BnaA10g21860D	122	128	na	3
Bn-scaff_16002_1-p1767743	chrC03	12604057	127	7	9	105	39.0		134	114	na	5
Bn-scaff_18206_3-p62755	chrC06	18959652	131	12	4	100	38.9		143	104	na	6
Bn-scaff_16912_1-p190291	chrC09	12697195	129	9	8	104	39.0	BnaC09g15770D
Bn-scaff_20836_1-p198809	chrC09	12804839	129	8	9	105	39.4
Bn-scaff_20836_1-p198391	chrC09	12805246	129	8	9	105	39.4		137	112	2	2
Bn-scaff_20836_1-p197940	chrC09	12805697	130	8	9	105	39.8
Bn-scaff_20836_1-p197387	chrC09	12806250	129	8	9	105	39.4
Bn-scaff_20836_1-p196601	chrC09	12807036	129	8	9	104	39.0
Regions from deep sequencing
chrA02_3321143	chrA02	3321143	127	9	12	105	37.2	Bna.SRR1.A02
chrA02_3862842	chrA02	3862842	120	3	19	111	37.1	Bna.VIN3.A02
chrA03_5891342	chrA03	5891342	126	6	13	107	38.3	protein agamous-like 71
chrA09_random_3749261	chrA09_random	3749261	126	12	13	102	34.4	Bna.CCR1.A09_random
chrA10_14998726	chrA10	14998726	127	10	12	104	36.5	Bna.FLC.A10
chrC02_random_990005	chrC02_random	990005	125	11	14	103	34.4	Bna.FT.C02_random promoter

The table shows the marker name, chromosomal position and the number of lines carrying either a winter or a spring allele in the respective winter-type and spring-type populations. The table also gives the −log(p-value) used to determine the split markers, along with the gene ID where the marker is located. If empty, the marker is non-genic. The markers with the highest −log(p-value) in each split region are shown in bold letters. The last four columns of the table show how many clear winter or spring haplotypes were counted, along with the number of mixed haplotypes and deletions. For regions only containing one marker, mixed haplotypes do not apply (na).