Table 4. Selected candidate genes for all 12 regions associated with the split between winter-type and spring-type B. napus accessions.
| Chromosome | Marker with highest p-value | Candidate | Distance from closest split marker [kbp] |
|---|---|---|---|
| chrA01 | Bn-A01-p4803773 | dna topoisomerase 2 | 502.7 |
| pseudo-response regulator 2 | 57.0 | ||
| agamous-like protein 1 | 386.3 | ||
| probable lysine-specific demethylase jmj14-like | 877.5 | ||
| small rna 2 -o-methyltransferase | 990.8 | ||
| chrA02 | Bn-A02-p3207085 | flowering locus c | 557.1 |
| transcription factor hy5 | 342.1 | ||
| embryonic flower 1 | 281.6 | ||
| nuclear transcription factor y subunit a-1 | 127.5 | ||
| flowering time control protein fy | 8.1 | ||
| zinc finger protein knuckles | 44.4 | ||
| dna (cytosine-5)-methyltransferase drm2 | 121.7 | ||
| chrA02 | Bn-A02-p5917045 | histone deacetylase | 403.8 |
| auxin response factor 4 | 81.4 | ||
| e3 sumo-protein ligase siz1 | 53.5 | ||
| ap2-like ethylene-responsive transcription factor toe2 | 1.9 | ||
| pseudo-response regulator 3 | 8.2 | ||
| sensitivity to red light reduced protein | 215.9 | ||
| multicopy suppressor of ira1 | 580.9 | ||
| vernalization insensitive 3 | 757.8 | ||
| chrA03 | Bn-A03-p6636780 | protein agamous-like 71 | 19.3 |
| protein agamous-like 42 | 22.4 | ||
| protein phosphatase | 8.2 | ||
| polycomb group protein embryonic flower 2 | 70.5 | ||
| frigida | 124.9 | ||
| flowering locus c | 311.8 | ||
| chrA03 | Bn-A03-p9836757 | histone h2a | 539.8 |
| chromatin structure-remodeling complex protein syd | 445.8 | ||
| protein early flowering 4-like | 164.3 | ||
| btb poz domain-containing protein | 48.3 | ||
| chrA07 | Bn-A07-p15352802 | two-component response regulator arr5 | 352.9 |
| sin3 histone deacetylase complex | 654.6 | ||
| protein argonaute 7-like | 894.1 | ||
| floral homeotic protein apetala 1 | 964.5 | ||
| chrA09 | Bn-A09-p30909393 | protein early flowering 3-like | 17.9 |
| e3 ubiquitin-protein ligase orthrus 2 | 67.9 | ||
| dna methyltransferase | 727.3 | ||
| chrA10 | Bn-A10-p7357555 | topoisomerase i | 651.5 |
| swinger | 285.1 | ||
| histone acetyltransferase type b catalytic subunit-like | 187.2 | ||
| chrA10 | Bn-scaff_17109_2-p79906 | transcription factor hy5 | 261.7 |
| flowering-promoting factor 1-like | 99.2 | ||
| flowering locus c | 81.8 | ||
| chrC03 | Bn-scaff_16002_1-p1767743 | btb poz domain-containing protein | 67.5 |
| two-component response regulator arr16 | 12.8 | ||
| phy rapidly regulated 1 | 743.0 | ||
| chrC06 | Bn-scaff_18206_3-p62755 | histone z | 939.5 |
| squamosa-promoter binding protein | 213.7 | ||
| shatterproof1 | 749.7 | ||
| chrC09 | Bn-scaff_20836_1-p197940 | set domain isoform 1 | 845.4 |
The table lists the chromosome and the marker with the most significant deviation from the expected random distribution, together with candidate genes selected based on gene ontology and literature. The last column specifies the distance of the gene to the closest marker within the split-associated region. The candidate gene closest to the split region is shown in italics.