Table 1.

Top hits common to RNA-seq and LFQ proteomics

Gene	log2FC RNA	P value RNA	log2FC protein	P value protein
Proximally enriched
agr2	3.841	2.88e−25	3.229	2.27e−07
aldh1a2*	2.954	6.07e−19	2.683	6.15e−06
aldh1l1*	3.209	1.56e−148	2.232	5.13e−04
bgnb*	2.128	2.83e−28	2.698	2.50e−03
bhmt*	1.927	4.96e−66	2.596	5.54e−08
c4*	3.531	9.67e−29	1.122	2.27e−02
capn12*	2.712	9.97e−116	5.402	1.09e−14
fabp1b.2	10.572	8.32e−22	1.517	8.42e−02
fgfbp2a*	2.355	3.90e−40	3.831	6.75e−08
gyg1b*	3.981	3.56e−68	2.876	2.73e−04
hapln1a*	3.557	2.45e−55	7.948	5.33e−15
hgd*	1.852	6.21e−60	3.399	5.77e−09
hsd17b7	2.304	2.28e−17	2.840	3.03e−05
mbpa*	2.480	1.72e−67	2.501	7.02e−03
muc5.2*	6.864	0	5.482	5.44e−14
myh11b	3.485	1.00e−4	2.127	2.47e−06
paplnb	7.086	2.42e−07	2.475	1.15e−02
ppp1r1c*	3.477	9.60e−53	1.738	3.96e−03
si:dkey-65b12.6*	6.237	0	4.092	1.93e−06
si:dkeyp-93a5.3	4.302	5.74e−4	1.664	1.73e−04
vcanb*	2.194	2.48e−23	3.772	1.29e−09
vim*	1.722	1.75e−21	1.910	1.05e−03
zgc:136930	2.127	1.76e−21	2.635	3.04e−04
zgc:172244	7.378	9.32e−12	5.125	8.44e−15
Distally enriched
and1	8.188	9.01e−104	2.511	2.75e−02
and2	17.327	2.25e−36	2.617	2.82e−03
anxa1c*	1.743	4.36e−56	1.700	7.49e−12
bco1*	2.759	1.68e−80	1.644	1.00e−02
ca2*	1.922	2.51e−31	1.849	7.28e−07
krt93*	4.738	2.25e−23	3.868	8.93e−07
krt94	3.533	2.00e−42	2.940	6.59e−13
tgfbi*	2.720	3.49e−119	2.097	1.47e−03

^*Indicates genes present in a gradient across proximal, middle, and distal regions at the RNA level, as shown in Fig. 1B.