Table 1. Putative prophages of the complete genome CFSAN029793 identified by a combination of PHAST [32], PHASTER [33] and prophage insertion site examination.

Prophage	Length (kbp)	Completeness	Insertion site	Positiona	Possible phage match and NCBI Accession
1	55.0	Intact	tRNA-Arg TCT	693457–748456	Listeria LP-101 (NC_024387)
2	40.3b	Intact	comK	1856189-1896515b	Listeria A118 (NC_003216)
3	41.8	Intact	tRNA-Arg CCG	2033993–2075835	Listeria A006 (NC_009815)
4	10.7	Questionable		2604325–2615053	Listeria A118 (NC_003216)

^aPosition based on the complete genome of CFSAN029793. PHAST was used to identify prophage insertion sites and PHASTER was used to identify the start and end of prophages.

^bThe entire region was first identified by PHAST/PHASTER. The subsequently identified insertion site, comK, was examined to slightly modify the PHASTER-identified start and end positions of this prophage.