Table 3. Significant genes identified for BW and pH value traits by gene-based GWAS method.
| Ensemble ID | BTA | Start(bp) | End(bp) | P value | Gene symbol |
|---|---|---|---|---|---|
| ENSBTAG00000005108a | 6 | 41236589 | 41640789 | 1.41E-12 | SLIT2 |
| ENSBTAG00000021582a | 6 | 38765969 | 38812051 | 9.60E-11 | NCAPG |
| ENSBTAG00000018303a | 16 | 59132781 | 59456250 | 1.12E-09 | PAPPA2 |
| ENSBTAG00000046561a | 6 | 38840894 | 38992112 | 3.93E-09 | LCORL |
| ENSBTAG00000045804a | 6 | 38541579 | 38541674 | 4.71E-09 | novel gene |
| ENSBTAG00000005932a | 6 | 38614370 | 38672306 | 8.01E-09 | FAM184B |
| ENSBTAG00000011187a | 6 | 37355568 | 37457493 | 1.29E-08 | FAM13A |
| ENSBTAG00000019441a | 6 | 38603034 | 38608841 | 1.53E-08 | MED28 |
| ENSBTAG00000032819a | 1 | 71072051 | 71085633 | 8.44E-08 | MUC20 |
| ENSBTAG00000005989a | 6 | 38574590 | 38600027 | 1.07E-07 | LAP3 |
| ENSBTAG00000011973a | 6 | 38754415 | 38754897 | 1.60E-07 | DCAF16 |
| ENSBTAG00000047743a | 6 | 41709362 | 43021626 | 7.47E-07 | KCNIP4 |
| ENSBTAG00000018203b | 3 | 26319356 | 26347752 | 9.65E-08 | CD101 |
| ENSBTAG00000033217b | 3 | 16376436 | 16403812 | 9.78E-08 | TPM1 |
| ENSBTAG00000015147b | 3 | 18799612 | 18810545 | 5.19E-07 | S100A10 |
Ensemble ID = gene ID name in Ensemble database.
BTA = Bos Taurus Autosome.
Start(bp) = the gene start position (bp) on Ensemble database.
End(bp) = the gene end position (bp) on Ensemble database.
P value = p-values calculated by Fisher’s combination test.
Gene symbol: the corresponding gene name.