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. 2017 Feb 6;18:91. doi: 10.1186/s12859-017-1498-y

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© The Author(s). 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Type-I error rates from logistic regressions of the permuted HD data. Figure 3 contains Type-I error rates from Classical Logistic (CL), Bayes Logistic (BL), Firth’s Logistic (FL) regressions of the permuted HD data at alpha levels of 0.05 and 0.01. Each empty dot represents Type-I error rate of a gene. The dots filled with colors inside of boxes denote average values of Type-I error rates in each category of dispersion groups. The black dotted horizontal lines are our alpha levels. a shows Type-I error rates of genes having mean expression value of greater than 3 at alpha level of 0.05. b displays Type-I error rates of genes having mean expression value of greater than 3 at alpha level of 0.01