Table 2. Expression levels of genes discussed in the text.
Gene | Product | Expression Control | Expression Microoxic | Expression Hyperoxic | Log2 (Microoxic/Control) | Log2 (Hyperoxic/Control) |
---|---|---|---|---|---|---|
AM1_4394 | PSI assembly protein, Ycf37 | 534 | 433 | 525 | −0.30 | −0.02 |
AM1_2827 | PSI assembly protein, Ycf3 | 971 | 636 | 649 | −0.61 | −0.58 |
AM1_1082 | PSI assembly protein, Ycf4 | 319 | 346 | 297 | 0.12 | −0.10 |
AM1_2457 | PSI core protein, PsaA | 27,521 | 11,603 | 45,090 | −1.25 | 0.71 |
AM1_2458 | PSI core protein, PsaB | 25,295 | 8553 | 27,164 | −1.56 | 0.10 |
AM1_1660 | PSI ferredoxin protein, PsaC | 79,831 | 18,946 | 44,342 | −2.07 | −0.85 |
AM1_5144 | PSI protein, PsaD | 12,271 | 3740 | 6069 | −1.71 | −1.02 |
AM1_2503 | PSI protein, PsaE | 13,114 | 3720 | 4762 | −1.82 | −1.46 |
AM1_1440 | PSI protein, PsaF | 18,274 | 6802 | 16,128 | −1.43 | −0.18 |
AM1_1439 | PSI protein, PsaJ | 26,686 | 10,852 | 24,983 | −1.30 | −0.10 |
AM1_1120 | PSI protein, PsaK | 5411 | 2674 | 2936 | −1.02 | −0.88 |
AM1_1637 | PSI protein, PsaK | 5345 | 2635 | 3063 | −1.02 | −0.80 |
AM1_1437 | PSI protein, PsaL | 13,970 | 3888 | 6404 | −1.84 | −1.13 |
AM1_6426 | PSI protein, PsaM | 85,093 | 14,553 | 27,494 | −2.55 | −1.63 |
AM1_0448 | PSII D1 protein, PsbA | 40 | 251 | 25 | 2.62 | −0.66 |
AM1_2166 | PSII D1 protein, PsbA | 14,425 | 6869 | 42,113 | −1.07 | 1.55 |
AM1_2889 | PSII D1 protein, PsbA | 19,376 | 5675 | 65,901 | −1.77 | 1.77 |
AM1_2026 | PSII CP47 protein, PsbB | 10,087 | 2155 | 6568 | −2.23 | −0.62 |
AM1_1084 | PSII CP43 protein, PsbC | 4186 | 1012 | 4094 | −2.05 | −0.03 |
AM1_4084 | PSII D2 protein, PsbD | 9385 | 4764 | 26,427 | −0.98 | 1.49 |
AM1_1083 | PSII D2 protein, PsbD | 9452 | 4747 | 19,155 | −0.99 | 1.02 |
AM1_6045 | PSII D2 protein, PsbD | 42 | 12 | 45 | −1.73 | 0.10 |
AM1_1130 | Cytochrome b559 alpha subunit, PsbE | 47 | 21 | 33 | −1.13 | −0.50 |
AM1_2630 | Cytochrome b559 alpha subunit, PsbE | 34,459 | 11,070 | 17,313 | −1.64 | −0.99 |
AM1_1129 | Cytochrome b559 beta subunit, PsbF | 20 | 20 | 20 | 0.00 | 0.00 |
AM1_5512 | PSII 10 kDa phosphoprotein, PsbH | 14,928 | 3783 | 12,054 | −1.98 | −0.31 |
AM1_3799 | PSII protein, PsbI | 9360 | 3927 | 4252 | −1.25 | −1.14 |
AM1_2629 | PSII protein, PsbJ | 7734 | 5426 | 17,622 | −0.51 | 1.19 |
AM1_3851 | PSII protein, PsbK | 55,059 | 12,799 | 28,992 | −2.10 | −0.93 |
AM1_6425 | PSII subunit, PsbL | 9796 | 4483 | 11,606 | −1.13 | 0.24 |
AM1_2024 | PSII protein, PsbM | 1021 | 128 | 465 | −2.99 | −1.13 |
AM1_5511 | PSII protein, PsbN | 125 | 25 | 116 | −2.28 | −0.11 |
AM1_0526 | PSII manganese-stabilizing protein, PsbO | 6217 | 1533 | 5680 | −2.02 | −0.13 |
AM1_0613 | PSII protein, PsbP | 767 | 460 | 908 | −0.74 | 0.24 |
AM1_3795 | PSII protein, PsbQ | 8045 | 3177 | 4092 | −1.34 | −0.98 |
AM1_5050 | PSII protein, PsbT | 247 | 61 | 97 | −2.00 | −1.34 |
AM1_G0114 | PSII 12 kDa extrinsic protein, PsbU | 132 | 312 | 28 | 1.23 | −2.20 |
AM1_D0138 | PSII 12 kDa extrinsic protein, PsbU | 481 | 438 | 1245 | −0.13 | 1.37 |
AM1_3966 | PSII 12 kDa extrinsic protein, PsbU | 5964 | 2305 | 4019 | −1.37 | −0.57 |
AM1_5046 | PSII 12 kDa extrinsic protein, PsbU | 687 | 250 | 52 | −1.45 | −3.70 |
AM1_3885 | Cytochrome c550 subunit of PSII, PsbV | 14,802 | 7281 | 18,762 | −1.02 | 0.34 |
AM1_3886 | Cytochrome c550 PsbV-like protein | 2641 | 272 | 1332 | −3.27 | −0.99 |
AM1_2120 | PSII protein, PsbX | 1297 | 1064 | 644 | −0.29 | −1.01 |
AM1_2631 | PSII stability/assembly factor, Ycf48 | 454 | 259 | 209 | −0.81 | −1.12 |
AM1_1011 | PSII protein, PsbZ | 18,302 | 14,120 | 6270 | −0.37 | −1.55 |
AM1_4426 | PSII protein, Psb27 | 459 | 331 | 120 | −0.47 | −1.93 |
AM1_5552 | PSII protein, Psb28 | 178 | 284 | 254 | 0.67 | 0.51 |
AM1_4891 | PSII biogenesis protein, Psb29 | 157 | 169 | 180 | 0.11 | 0.20 |
AM1_C0117 | R-phycocyanin-2 subunit alpha | 392 | 67 | 626 | −2.53 | 0.67 |
AM1_1558 | Allophycocyanin alpha subunit, ApcA | 17 | 43 | 83 | 1.29 | 2.22 |
AM1_4469 | Allophycocyanin alpha subunit, ApcA | 30 | 31 | 11 | 0.05 | −1.37 |
AM1_5810 | Allophycocyanin alpha subunit, ApcA | 3 | 3 | 14 | 0.00 | 1.91 |
AM1_2376 | Allophycocyanin beta subunit, ApcB | 4936 | 5426 | 6393 | 0.14 | 0.37 |
AM1_C0213 | Phycocyanin alpha subunit, CpcA | 17,975 | 4996 | 8646 | −1.85 | −1.06 |
AM1_C0096 | Phycocyanin alpha subunit, CpcA | 18,218 | 4972 | 8449 | −1.87 | −1.11 |
AM1_C0099 | Phycocyanin alpha subunit, CpcA | 16,251 | 3657 | 3128 | −2.15 | −2.38 |
AM1_C0191 | Phycocyanin alpha subunit, CpcA | 16,262 | 3657 | 3158 | −2.15 | −2.36 |
AM1_C0100 | Phycocyanin beta subunit, CpcB | 9490 | 3987 | 5119 | −1.25 | −0.89 |
AM1_C0192 | Phycocyanin beta subunit, CpcB | 18,438 | 6232 | 11,198 | −1.56 | −0.72 |
AM1_C0212 | Phycocyanin beta subunit, CpcB | 32,682 | 7338 | 60,428 | −2.15 | 0.89 |
AM1_C0098 | Phycocyanin beta subunit, CpcB | 42,155 | 8403 | 23,434 | −2.33 | −0.85 |
AM1_C0215 | PBS 32.1 kDa linker polypeptide, CpcC | 8683 | 2494 | 5084 | −1.80 | −0.77 |
AM1_C0094 | PBS 32.1 kDa linker polypeptide, CpcC | 8631 | 2477 | 4950 | −1.80 | −0.80 |
AM1_C0093 | PBS linker protein, CpcD | 19,292 | 6719 | 16,086 | −1.52 | −0.26 |
AM1_C0216 | PBS linker protein, CpcD | 18,769 | 6471 | 16,609 | −1.54 | −0.18 |
AM1_C0118 | Phycocyanobilin lyase subunit alpha, CpcE | 438 | 255 | 500 | −0.78 | 0.19 |
AM1_C0272 | Phycocyanobilin lyase subunit beta, CpcF | 1156 | 731 | 971 | −0.66 | −0.25 |
AM1_C0203 | PBS rod-core linker polypeptide, CpcG | 2103 | 933 | 1711 | −1.17 | −0.30 |
AM1_C0092 | PBS rod-core linker polypeptide, CpcG | 4398 | 1669 | 1772 | −1.40 | −1.31 |
AM1_C0102 | PBS rod-core linker polypeptide, CpcG | 4182 | 1090 | 2122 | −1.94 | −0.98 |
AM1_0450 | Rieske iron-sulfur (cyt b6f) fusion protein | 16 | 276 | 10 | 4.03 | −0.63 |
AM1_1552 | Transcriptional regulator, ChlR | 21 | 82 | 58 | 1.92 | 1.42 |
AM1_0465 | Oxygen-dependent MPE-cyclase, AcsF | 16 | 1406 | 6 | 6.37 | −1.28 |
AM1_0466 | Heme oxygenase | 33 | 1266 | 7 | 5.22 | −2.09 |
AM1_1444 | D-POR, ChlN | 720 | 126 | 940 | −2.51 | 0.38 |
AM1_1445 | D-POR, ChlL | 1657 | 421 | 3533 | −1.97 | 1.09 |
AM1_1539 | D-POR, ChlB | 1659 | 417 | 2684 | −1.99 | 0.69 |
AM1_4366 | Uroporphyrin-III C-methyltransferase, CysG | 195 | 92 | 430 | −1.08 | 1.14 |
AM1_2801 | Protein with homology to HemJ | 182 | 178 | 162 | −0.03 | −0.17 |
AM1_0467 | O2-independent coproporphyrinogen III oxidase, HemN | 6 | 822 | 5 | 6.88 | −0.22 |
AM1_1283 | O2-independent coproporphyrinogen III oxidase, HemN | 53 | 46 | 44 | −0.20 | −0.26 |
AM1_0615 | Coproporphyrinogen III oxidase, aerobic, HemF | 192 | 103 | 102 | −0.89 | −0.91 |
AM1_2295 | Oxygen-dependent MPE-cyclase, AcsF | 3331 | 1722 | 3430 | −0.95 | 0.04 |
AM1_1959 | Ferrochelatase, HemH | 74 | 57 | 50 | −0.37 | −0.56 |
AM1_C0204 | Ferrochelatase, HemH | 946 | 788 | 762 | −0.26 | −0.31 |
AM1_C0107 | Ferrochelatase, HemH | 907 | 729 | 745 | −0.31 | −0.28 |
AM1_3193 | High light inducible protein, HLIP | 21,383 | 4241 | 38,036 | −2.33 | 0.83 |
AM1_3366 | High light inducible protein, HLIP | 2 | 16 | 2 | 2.50 | 0.00 |
AM1_1222 | FeS assembly protein, SufD | 123 | 17 | 273 | −2.78 | 1.14 |
AM1_1223 | FeS assembly ATPase, SufC | 416 | 80 | 2067 | −2.36 | 2.31 |
AM1_1224 | FeS assembly protein, SufB | 177 | 30 | 745 | −2.52 | 2.07 |
AM1_5239 | Copper/Zinc superoxide dismutase, SodCC | 38 | 100 | 27 | 1.37 | −0.48 |
AM1_2962 | Mn/Fe-containing superoxide dismutase, Sod | 98 | 168 | 126 | 0.77 | 0.36 |
AM1_3669 | Mn/Fe-containing superoxide dismutase, Sod | 1061 | 1004 | 1779 | −0.08 | 0.75 |
AM1_0511 | Ni-containing superoxide dismutase, SodN | 2744 | 1868 | 4456 | −0.55 | 0.70 |
AM1_3715 | Catalase/peroxidase HPI, KatG | 122 | 55 | 1118 | −1.14 | 3.19 |
AM1_3681 | Glutathione-disulfide reductase, Gor | 88 | 62 | 168 | −0.50 | 0.93 |
AM1_A0300 | Peroxidase/ antioxidant protein | 40 | 21 | 44 | −0.90 | 0.13 |
AM1_0449 | Rhodanese domain protein | 31 | 281 | 0 | 3.14 | −5.00 |
AM1_0451 | Conserved hypothetical protein | 3 | 276 | 0 | 6.11 | −2.00 |
Expression values refer to RPKM normalized by the upper quartile of gene expression. MPE, Mg-protoporphyrin IX monomethyl ester; D-POR, protochlorophyllide reductase; PSI, Photosystem I; PSII, Photosystem II; PBS, Phycobilisome.