Skip to main content
. 2016 Dec 14;7(2):517–532. doi: 10.1534/g3.116.036855

Table 2. Expression levels of genes discussed in the text.

Gene Product Expression Control Expression Microoxic Expression Hyperoxic Log2 (Microoxic/Control) Log2 (Hyperoxic/Control)
AM1_4394 PSI assembly protein, Ycf37 534 433 525 −0.30 −0.02
AM1_2827 PSI assembly protein, Ycf3 971 636 649 −0.61 −0.58
AM1_1082 PSI assembly protein, Ycf4 319 346 297 0.12 −0.10
AM1_2457 PSI core protein, PsaA 27,521 11,603 45,090 −1.25 0.71
AM1_2458 PSI core protein, PsaB 25,295 8553 27,164 −1.56 0.10
AM1_1660 PSI ferredoxin protein, PsaC 79,831 18,946 44,342 −2.07 −0.85
AM1_5144 PSI protein, PsaD 12,271 3740 6069 −1.71 −1.02
AM1_2503 PSI protein, PsaE 13,114 3720 4762 −1.82 −1.46
AM1_1440 PSI protein, PsaF 18,274 6802 16,128 −1.43 −0.18
AM1_1439 PSI protein, PsaJ 26,686 10,852 24,983 −1.30 −0.10
AM1_1120 PSI protein, PsaK 5411 2674 2936 −1.02 −0.88
AM1_1637 PSI protein, PsaK 5345 2635 3063 −1.02 −0.80
AM1_1437 PSI protein, PsaL 13,970 3888 6404 −1.84 −1.13
AM1_6426 PSI protein, PsaM 85,093 14,553 27,494 −2.55 −1.63
AM1_0448 PSII D1 protein, PsbA 40 251 25 2.62 −0.66
AM1_2166 PSII D1 protein, PsbA 14,425 6869 42,113 −1.07 1.55
AM1_2889 PSII D1 protein, PsbA 19,376 5675 65,901 −1.77 1.77
AM1_2026 PSII CP47 protein, PsbB 10,087 2155 6568 −2.23 −0.62
AM1_1084 PSII CP43 protein, PsbC 4186 1012 4094 −2.05 −0.03
AM1_4084 PSII D2 protein, PsbD 9385 4764 26,427 −0.98 1.49
AM1_1083 PSII D2 protein, PsbD 9452 4747 19,155 −0.99 1.02
AM1_6045 PSII D2 protein, PsbD 42 12 45 −1.73 0.10
AM1_1130 Cytochrome b559 alpha subunit, PsbE 47 21 33 −1.13 −0.50
AM1_2630 Cytochrome b559 alpha subunit, PsbE 34,459 11,070 17,313 −1.64 −0.99
AM1_1129 Cytochrome b559 beta subunit, PsbF 20 20 20 0.00 0.00
AM1_5512 PSII 10 kDa phosphoprotein, PsbH 14,928 3783 12,054 −1.98 −0.31
AM1_3799 PSII protein, PsbI 9360 3927 4252 −1.25 −1.14
AM1_2629 PSII protein, PsbJ 7734 5426 17,622 −0.51 1.19
AM1_3851 PSII protein, PsbK 55,059 12,799 28,992 −2.10 −0.93
AM1_6425 PSII subunit, PsbL 9796 4483 11,606 −1.13 0.24
AM1_2024 PSII protein, PsbM 1021 128 465 −2.99 −1.13
AM1_5511 PSII protein, PsbN 125 25 116 −2.28 −0.11
AM1_0526 PSII manganese-stabilizing protein, PsbO 6217 1533 5680 −2.02 −0.13
AM1_0613 PSII protein, PsbP 767 460 908 −0.74 0.24
AM1_3795 PSII protein, PsbQ 8045 3177 4092 −1.34 −0.98
AM1_5050 PSII protein, PsbT 247 61 97 −2.00 −1.34
AM1_G0114 PSII 12 kDa extrinsic protein, PsbU 132 312 28 1.23 −2.20
AM1_D0138 PSII 12 kDa extrinsic protein, PsbU 481 438 1245 −0.13 1.37
AM1_3966 PSII 12 kDa extrinsic protein, PsbU 5964 2305 4019 −1.37 −0.57
AM1_5046 PSII 12 kDa extrinsic protein, PsbU 687 250 52 −1.45 −3.70
AM1_3885 Cytochrome c550 subunit of PSII, PsbV 14,802 7281 18,762 −1.02 0.34
AM1_3886 Cytochrome c550 PsbV-like protein 2641 272 1332 −3.27 −0.99
AM1_2120 PSII protein, PsbX 1297 1064 644 −0.29 −1.01
AM1_2631 PSII stability/assembly factor, Ycf48 454 259 209 −0.81 −1.12
AM1_1011 PSII protein, PsbZ 18,302 14,120 6270 −0.37 −1.55
AM1_4426 PSII protein, Psb27 459 331 120 −0.47 −1.93
AM1_5552 PSII protein, Psb28 178 284 254 0.67 0.51
AM1_4891 PSII biogenesis protein, Psb29 157 169 180 0.11 0.20
AM1_C0117 R-phycocyanin-2 subunit alpha 392 67 626 −2.53 0.67
AM1_1558 Allophycocyanin alpha subunit, ApcA 17 43 83 1.29 2.22
AM1_4469 Allophycocyanin alpha subunit, ApcA 30 31 11 0.05 −1.37
AM1_5810 Allophycocyanin alpha subunit, ApcA 3 3 14 0.00 1.91
AM1_2376 Allophycocyanin beta subunit, ApcB 4936 5426 6393 0.14 0.37
AM1_C0213 Phycocyanin alpha subunit, CpcA 17,975 4996 8646 −1.85 −1.06
AM1_C0096 Phycocyanin alpha subunit, CpcA 18,218 4972 8449 −1.87 −1.11
AM1_C0099 Phycocyanin alpha subunit, CpcA 16,251 3657 3128 −2.15 −2.38
AM1_C0191 Phycocyanin alpha subunit, CpcA 16,262 3657 3158 −2.15 −2.36
AM1_C0100 Phycocyanin beta subunit, CpcB 9490 3987 5119 −1.25 −0.89
AM1_C0192 Phycocyanin beta subunit, CpcB 18,438 6232 11,198 −1.56 −0.72
AM1_C0212 Phycocyanin beta subunit, CpcB 32,682 7338 60,428 −2.15 0.89
AM1_C0098 Phycocyanin beta subunit, CpcB 42,155 8403 23,434 −2.33 −0.85
AM1_C0215 PBS 32.1 kDa linker polypeptide, CpcC 8683 2494 5084 −1.80 −0.77
AM1_C0094 PBS 32.1 kDa linker polypeptide, CpcC 8631 2477 4950 −1.80 −0.80
AM1_C0093 PBS linker protein, CpcD 19,292 6719 16,086 −1.52 −0.26
AM1_C0216 PBS linker protein, CpcD 18,769 6471 16,609 −1.54 −0.18
AM1_C0118 Phycocyanobilin lyase subunit alpha, CpcE 438 255 500 −0.78 0.19
AM1_C0272 Phycocyanobilin lyase subunit beta, CpcF 1156 731 971 −0.66 −0.25
AM1_C0203 PBS rod-core linker polypeptide, CpcG 2103 933 1711 −1.17 −0.30
AM1_C0092 PBS rod-core linker polypeptide, CpcG 4398 1669 1772 −1.40 −1.31
AM1_C0102 PBS rod-core linker polypeptide, CpcG 4182 1090 2122 −1.94 −0.98
AM1_0450 Rieske iron-sulfur (cyt b6f) fusion protein 16 276 10 4.03 −0.63
AM1_1552 Transcriptional regulator, ChlR 21 82 58 1.92 1.42
AM1_0465 Oxygen-dependent MPE-cyclase, AcsF 16 1406 6 6.37 −1.28
AM1_0466 Heme oxygenase 33 1266 7 5.22 −2.09
AM1_1444 D-POR, ChlN 720 126 940 −2.51 0.38
AM1_1445 D-POR, ChlL 1657 421 3533 −1.97 1.09
AM1_1539 D-POR, ChlB 1659 417 2684 −1.99 0.69
AM1_4366 Uroporphyrin-III C-methyltransferase, CysG 195 92 430 −1.08 1.14
AM1_2801 Protein with homology to HemJ 182 178 162 −0.03 −0.17
AM1_0467 O2-independent coproporphyrinogen III oxidase, HemN 6 822 5 6.88 −0.22
AM1_1283 O2-independent coproporphyrinogen III oxidase, HemN 53 46 44 −0.20 −0.26
AM1_0615 Coproporphyrinogen III oxidase, aerobic, HemF 192 103 102 −0.89 −0.91
AM1_2295 Oxygen-dependent MPE-cyclase, AcsF 3331 1722 3430 −0.95 0.04
AM1_1959 Ferrochelatase, HemH 74 57 50 −0.37 −0.56
AM1_C0204 Ferrochelatase, HemH 946 788 762 −0.26 −0.31
AM1_C0107 Ferrochelatase, HemH 907 729 745 −0.31 −0.28
AM1_3193 High light inducible protein, HLIP 21,383 4241 38,036 −2.33 0.83
AM1_3366 High light inducible protein, HLIP 2 16 2 2.50 0.00
AM1_1222 FeS assembly protein, SufD 123 17 273 −2.78 1.14
AM1_1223 FeS assembly ATPase, SufC 416 80 2067 −2.36 2.31
AM1_1224 FeS assembly protein, SufB 177 30 745 −2.52 2.07
AM1_5239 Copper/Zinc superoxide dismutase, SodCC 38 100 27 1.37 −0.48
AM1_2962 Mn/Fe-containing superoxide dismutase, Sod 98 168 126 0.77 0.36
AM1_3669 Mn/Fe-containing superoxide dismutase, Sod 1061 1004 1779 −0.08 0.75
AM1_0511 Ni-containing superoxide dismutase, SodN 2744 1868 4456 −0.55 0.70
AM1_3715 Catalase/peroxidase HPI, KatG 122 55 1118 −1.14 3.19
AM1_3681 Glutathione-disulfide reductase, Gor 88 62 168 −0.50 0.93
AM1_A0300 Peroxidase/ antioxidant protein 40 21 44 −0.90 0.13
AM1_0449 Rhodanese domain protein 31 281 0 3.14 −5.00
AM1_0451 Conserved hypothetical protein 3 276 0 6.11 −2.00

Expression values refer to RPKM normalized by the upper quartile of gene expression. MPE, Mg-protoporphyrin IX monomethyl ester; D-POR, protochlorophyllide reductase; PSI, Photosystem I; PSII, Photosystem II; PBS, Phycobilisome.