Table 2. Assembly and scaffolding statistics for C. canadensis genome: Canu v1.2 assembly metrics from 4.546 M input PacBio reads (48 Gb).
| Version Name | Number of Contigs | N50 (bp) | Total Bases (Gb) | Max Contig Length (Mb) | |
|---|---|---|---|---|---|
| Primary Canu assembly | CP | 11,982 | 538,502 | 2.484 | 4.666 |
| First Pilon polishing | CP1 | 11,982 | 539,399 | 2.488 | 4.678 |
| Second Pilon polishing | CP2 | 11,981 | 539,125 | 2.487 | 4.677 |
| Assembly reconciled with Abyss assembly | CP2-2 | 22,515 | 278,680 | 2.487 | 3.330 |
| Assembly scaffolded with FL- and PL-ORFs | CP2-3 | 21,170 | 317,558 | 2.518 | 4.235 |
| Unused PacBio reads (Singletons) | Unused | 188,572 | 14,524 | 1.803 | 0.074 |
PacBio, Pacific Biosciences; ORFs, open reading frames.