. Author manuscript; available in PMC: 2017 Feb 7.

Published in final edited form as: Mycol Prog. 2016 Sep;15(9):921–937. doi: 10.1007/s11557-016-1218-4

Table 1.

Isolates and accession numbers used in the phylogenetic analyses; those in bold were isolated/sequenced in the present study

Species	Isolate No.	Herbarium No.^a	Substrate/Host	Country	GenBank accession numbers
Species	Isolate No.	Herbarium No.^a	Substrate/Host	Country	act1	ITS	LSU	rpb1	rpb2	tef1	tub2
N. asiatica	MAFF 241439	BPI 879972	unid. dead bark	Japan	HM484505	HM484701	HM484563	–	JQ014140	–	HM484604
N. cinnabarina	CBS 125165	BPI 879981	Aesculus sp.	France	HM484503	HM484548	HM484562	HM484577	JQ014125	HM484527	HM484606
N. dematiosa	CBS 126570	BPI 749337	unid. dead bark	USA	HM484502a	HM484557	HM484561	HM484576	JQ014144	HM484534	HM484603
N. nigrescens	CBS 125148	BPI 871083	unid. dead twigs	USA	HM484618	HM484707	HM484720	HM484781	JQ014123	HM484672	HM484806
Septofusidium berolinense	CBS 731.70				KM231250	KM231841	KM231722	KM232274	KM232417	KM231978	KM232112
S. herbarum	CBS 265.58		Urtica dioica	UK	KM231251	KM231842	KM231723	KM232275	KM232418	KM231979	KM232113
Thyronectria aquifolii	CBS 125027	WU 30360	Ilex aquifolium	UK	KJ570663	HM534891	HM534891	KJ570715	HM534881	HM534870	KJ570638
T. asturiensis	CBS 136000	WU 32124	Quercus ilex	Spain	KJ570664	KJ570690	KJ570690	KJ570716	KJ570741	KJ570760	KJ570639
T. aurigera	CBS 109874	BPI 841465	Fraxinus excelsior	France	HM484511	HM484551	HM484573	HM484586	–	HM484521	HM484600
T. austroamericana	GG	WU 32664	Gymnocladus dioicus	Austria	KJ570665	KJ570691	KJ570691	KJ570717	KJ570742	KJ570761	KJ570640
T. balsamea	CBS 125137	NCSU	Abies fraseri	USA	JF832454	JF832599	JF832729	JF832805	JQ014142	JF832561	JF832849
T. berolinensis	CBS 127382	WU 30361	Ribes sanguineum	Austria	KJ570666	HM534893	HM534893	KJ570718	HM534883	HM534872	KJ570641
T. boothii	CBS 128977	BPI 881052	Picea abies	Slovakia	JF832475	JF832617	JF832755	JF832796	–	JF832552	JF832871
T. caraganae	TCA	WU 35938	Caragana arborescens	Ukraine	KX514381	KX514384	KX514384	KX514389	–	KX514395	KX514398
T. caraganae	TCA1	WU 35939	Caragana arborescens	Ukraine	KX514382	KX514385	KX514385	KX514390	–	KX514396	KX514399
T. caudata	CBS 136003	WU 32130	Berberis cretica	Greece	KJ570667	KJ570692	KJ570692	KJ570719	KJ570743	KJ570762	KJ570642
T. chrysogramma	TCH, CBS 141087	WU 35942	Ulmus americana	Canada	KX514383	KX514386	KX514386	KX514391	KX514392	KX514397	KX514400
T. concentrica	CBS 121121	BPI 878442	Agave americana	Italy	HM484514	HM484547	HM484572	HM484587	KM232409	HM484524	HM484609
	ALLA	WU 35943	Agave americana	Spain	–	KX514387	KX514387	–	–	–	–
	ALLM	WU 35944	Agave americana	Spain	–	KX514388	KX514388	–	KX514393	–	–
T. coryli	CBS 137264	WU 32129	Corylus avellana	Austria	KJ570669	KJ570693	KJ570693	KJ570721	KJ570744	KJ570763	KJ570644
T. cucurbitula	CBS 259.58		Pinus sylvestris	Netherlands	GQ505974	HM484541	GQ505998	GQ506028	JQ014131	HM484530	HM484592
T. giennensis rotundifolia	CBS 139474	AH 47011	Quercus ilex ssp. rotundifolia	Spain	KR057941	KR057943	KR057943	KR057945	KR057947	KR057949	KR057951
T. ilicicola	CBS 125147	BPI 880698	Ilex aquifolium	UK	HM484506	HM484538	HM484565	HM484579	–	HM484522	HM484590
T. lamyi	CBS 137263	WU 32159	Berberis vulgaris	Austria	KJ570672	KJ570695	KJ570695	KJ570723	KJ570746	KJ570765	KJ570647
T. miltina	CBS 121121	BPI 878442	Agave americana	Italy	HM484514	HM484547	HM484572	HM484587	KM232409	HM484524	HM484609
T. obscura	CBS 136923	WU 32142	Tamarix tetrandra	Austria	KJ570673	KJ570699	KJ570699	KJ570724	KJ570747	KJ570766	–
T. okinawensis	CBS 129369, MAFF 241410	BPI 881058, TUA-TPP-h92	Castanopsis sp.	Japan	JF832451	JF832674	JF832751	JF832827	–	JF832585	JF832878
T. pinicola	CBS 125166	BPI 881059	Pinus sylvestris	Germany	HM484508	HM484540	HM484567	HM484580	–	HM484528	HM484591
T. pistaciae	CBS 139475	AH 45402	Pistacia lentiscus	Spain	KR057942	KR057944	KR057944	KR057946	KR057948	KR057950	KR057952
T. quercicola rotundifolia	CBS 128976	BPI 871328	Quercus ilex ssp. rotundifolia	Spain	JF832450	JF832624	JF832743	JF832831	KM232411	JF832581	JF832880
T. rhodochlora	CBS 136006	WU 31656	Acer campestre	Austria	KJ570678	KJ570704	KJ570704	KJ570729	KX514394	KJ570771	KJ570651
T. rosellinii	CBS 129162	BPI 881066	Abies balsamea	USA	JF832474	JF832614	JF832739	JF832820	–	JF832578	JF832870
T. roseovirens	CBS 135999	WU 32154	Laburnum alpinum	Italy	KJ570683	KJ570709	KJ570709	KJ570734	KJ570754	KJ570776	KJ570656
T. sinopica	CBS 127386	WU 30364	Hedera helix	Austria	KJ570689	HM534900	HM534900	KJ570740	HM534890	HM534879	KJ570662
	CBS 125107	NY	Pinus strobus	USA	JF832467	JF832605	JF832725	JF832813	–	JF832569	JF832861
T. strobi
T. cf. virens	NP10	WU 33426	Ostrya carpinifolia	France	KM225678	KM225684	KM225684	KM225689	–	KM225696	KM225701
T. yuccae	CBS 125499		Yucca elata	USA	KM231247	KM231836	KM231717	KM232270	HQ897730	KM231974	KM232107
T. zangii	HMAS 251258	HMAS 251258	Populus sp.	China	JX843456	JN997424	JX843458	JX843452	–	JX843454	JN997421
T. zanthoxyli	CBS 129157	BPI 881069	unid. dead bark	USA	JF832510	JF832627	JF832753	JF832833	–	JF832590	JF832884
Tilachlidium brachiatum	CBS 363.97		Agaricus sp.	France	KM231248	KM231838	KM231719	KM232271	KM232414	KM231975	KM232109

AH Universidad de Alcalá, Madrid, Spain, BPI U.S. National Fungus Collections USDA-ARS MD USA, CBS Centraalbureau voor Schimmelcultures, Utrecht, The Netherlands, HMAS Institute of Microbiology, Chinese Academy of Sciences, Beijing, China, MAFF MAFF Genebank, National Institute of Agrobiological Sciences, Ibaraki, Japan, NCSU The Mycological Herbarium, North Carolina State University, NC, USA, NY The New York Botanical Garden, New York, USA, TUA-TPP-h Yuuri Hirooka, Tropical Plant Protection Lab Herbarium, Tokyo University of Agriculture, Tokyo, Japan, WU Herbarium of the University of Vienna, Austria