Table 2.
Summary of sequencing and sequence processing results.
| Subject ID | Cells | Raw reads | Final analyzed naïve sequencesa | Final analyzed memory sequencesa | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Naïve | Memory | Naïve | Memory | IgM | IgK | IgL | IgM | IgG | IgA | IgK | IgL | |
| AR02 | 143K | 66K | 939,295 | 918,374 | 3,739 | 3,382 | 2,481 | 2,794 | 1,539 | 2,990 | 10,139 | 7,501 |
| AR03 | 154K | 12K | 921,768 | 770,573 | 3,194 | 1,713 | 1,099 | 368b | 253b | 366b | 1,032b | 1,124b |
| AR04 | 324K | 39K | 995,808 | 541,605 | 47,577 | 19,034 | 11,417 | 4,216 | 1,689 | 2,290 | 9,003 | 6,340 |
| AR05 | 140K | 77K | 741,561 | 743,956 | 30,648 | 16,579 | 11,008 | 13,502 | 1,485 | 4,234 | 19,022 | 11,681 |
| MK02 | 57K | 50K | 894,106 | 787,754 | 427b | 327b | 162b | 6,479 | 927 | 888 | 6,753 | 3,413 |
| MK03 | 151K | 126K | 1,076,632 | 810,841 | 1,685 | 3,806 | 1,307 | 969 | 293 | 697 | 7,341 | 3,353 |
| MK04 | 59K | 7K | 958,717 | 398,324 | 8,123 | 5,180 | 3,101 | 543b | 105b | 257b | 1,056b | 687b |
| MK05 | 410K | 192K | 1,162,652 | 1,048,316 | 8,949 | 11,100 | 6,148 | 4,296 | 1,146 | 1,954 | 23,701 | 12,297 |
| MK08 | 50K | 25K | 916,527 | 898,976 | 3,236 | 2,115 | 1,579 | 864 | 436 | 1,609 | 3,390 | 3,110 |
| HD07 | 45K | 16K | 814,996 | 725,940 | 830b | 838b | 604b | 3,004 | 586 | 1,891 | 4,937 | 3,737 |
| HD09 | 171K | 38K | 1,332,467 | 535,370 | 14,079 | 14,124 | 7,304 | 2,167 | 501 | 954 | 9,021 | 4,616 |
| HD10 | 80K | 57K | 1,080,339 | 774,156 | 4,513 | 3,878 | 2,612 | 3,101 | 548 | 446 | 5,926 | 4,723 |
| HD13 | 89K | 21K | 933,799 | 401,302 | 6,262 | 7,732 | 3,224 | 2,552 | 1,223 | 1,265 | 7,467 | 4,585 |
Refers to the count of unique, error-corrected sequences which passed all quality control and filtering steps.
Excluded from analysis due to low yield of unique VH sequences.