Table 1.
Relative gene expression values (AZ-Ct vs. AZ-C0) of genes involved in cell wall modification exclusively regulated by ethylene in AZ-C cells.
| Name | Contig/singleton ID | Microarray probe | Putative Ath orthologue | Relative expression [log2 (AZ-Ct/AZ-C0)] | |
|---|---|---|---|---|---|
| 12 h | 24 h | ||||
| ENDO-1,4-β-GLUCANASES|CELLULASES (GH9s) | |||||
| CitCEL3 | aCL1687Contig1 | IC0AAA38AD03 | AT2G32990 | – | 0.69 |
| CitCEL6* | aCL1347Contig1 | C21007H10 | AT4G02290 | – | 4.15 |
| CitCEL10 | aCL7597Contig1 | IC0AAA68DE06 | AT4G02290 | – | 0.60 |
| CitCEL17 | aCL1288Contig1 | C32011E04 | AT1G75680 | −0.88 | – |
| CitCEL22 | aC20010F01SK_c | C20010F01 | AT1G23210 | – | 0.72 |
| POLYGALACTURONASES (GH28s) | |||||
| CitPG6 | aCL2029Contig1 | C03009E03 | AT4G23820 | –1.58 | – |
| CitPG16 | aCL5261Contig1 | C01018A12 | AT3G61490 | 1.02 | – |
| CitPG20* | AT3G07970 | in-situ hybridization | |||
| CitPG41 | aC18008C05Rv_c | C18008C05 | AT3G57790 | 1.10 | 1.49 |
| aCL1063Contig1 | IC0AAA19CA02 | AT3G57790 | 0.88 | 0.95 | |
| CitPG42 | aIC0AAA85AB02RM1_c | IC0AAA85AB02 | AT3G48950 | – | 0.63 |
| CitPG43 | aCL675Contig4 | IC0AAA67DG09 | AT2G43870 | – | 2.34 |
| PECTATE-LYASES (PL1s) | |||||
| CitPL1 | aC03011D06SK_c | C03011D06 | AT5G63180 | −0.86 | −0.80 |
| CitPL5 | aIC0AAA15AF11RM1_c | IC0AAA15AF11 | AT1G67750 | 2.66 | |
| PECTIN-METHYLESTERASES (CE8s) | |||||
| CitPME8 | aC05807A09SK_c | C05807A09 | AT4G33220 | −3.13 | −2.57 |
| CitPME11 | aCL1691Contig1 | C08033H07 | AT1G11580 | −2.30 | – |
| CitPME13 | aCL4116Contig2 | C01011H09 | AT5G53370 | −2.15 | −2.90 |
| CitPME24 | aCL1451Contig1 | IC0AAA40DF03 | AT1G69940 | 0.71 | 0.71 |
| CitPME41 | aCL2379Contig1 | C32102B03 | AT5G09760 | – | 1.41 |
| PECTIN-ACETYLESTERASES (CE18s) | |||||
| CitPAE1 | aKN0AAP13YN19FM1_c | KN0AAP13YN19 | AT3G62060 | −0.72 | – |
| CitPAE4 | aCL67Contig4 | C08028G04 | AT4G19420 | 0.58 | 0.51 |
| CitPAE6 | aCL7344Contig1 | C02003B05 | AT5G26670 | −1.57 | – |
| aKN0AAI1DH10FM2_c | KN0AAI1DH10 | AT5G26670 | −2.07 | – | |
| β-GALACTOSIDASES (GH35s) | |||||
| CitGBAL16 | aC31805H10EF_c | C31805H10 | AT4G36360 | −1.59 | |
| aCL7104Contig1 | C02004B02 | AT4G36360 | −1.01 | ||
| β-GALACTOSIDASES (GH2s) | |||||
| CitGH22 | aCL4443Contig1 | C31401H10 | AT3G54440 | 0.71 | 0.95 |
| β-GLUCOSIDASES (GH1s) | |||||
| CitBGLU17 | aCL5744Contig1 | C31007D10 | AT2G44480 | −0.59 | −0.55 |
| CitBGLU24 | aCL1136Contig3 | IC0AAA1CB06 | AT3G06510 | – | 0.62 |
| β-MANNOSIDASES (GH5s) | |||||
| CitMAN4 | aC04002G09SK_c | C04002G09 | AT1G02310 | 1.41 | – |
| XYLOGLUCAN ENDOTRANSGLYCOSYLASES/HYDROLASES (GH16s) | |||||
| CitXTH16 | aC02023G10SK_c | C02023G10 | AT4G03210 | −1.55 | −2.33 |
| CitXTH24 | aIC0AAA99CH05RM1_c | IC0AAA99CH05 | AT1G32170 | 1.07 | 1.03 |
| CitXTH28 | aCL6772Contig1 | C01009B04 | AT4G37800 | – | −0.88 |
| α-XYLOSIDASES (GH31s) | |||||
| CitXYL4 | aCL6235Contig1 | C05075C11 | AT1G68560 | −0.98 | – |
| β-XYLOSIDASES (GH3s) | |||||
| CitBXL13 | aCL3345Contig1 | C02024D10 | AT1G78060 | −0.63 | – |
| CitBXL16 | aCL8110Contig1 | IC0AAA75AA10 | AT5G20950 | −0.99 | – |
| EXPANSINS | |||||
| CitEXP14 | aCL2131Contig1 | IC0AAA14BD04 | AT2G40610 | – | 3.01 |
| aIC0AAA87BH09RM1_c | IC0AAA87BH09 | AT2G40610 | 1.63 | 3.19 | |
| CitEXP15 | aKN0AAQ1YG09RM1_c | KN0AAQ1YG09 | AT4G17030 | 1.69 | 1.40 |
| CitEXP19 | aC02006G07SK_c | C02006G07 | AT1G20190 | – | 0.75 |
| CELLULOSE SYNTHASES/CELLULOSE SYNTHASE-LIKE PROTEINS | |||||
| CitCes1 | aC16012C03SK_c | C16012C03 | AT4G24010 | 1.82 | – |
| CitCes2 | aIC0AAA5DG11RM1_c | IC0AAA5DG11 | AT5G05170 | −1.74 | – |
| CitCsl3 | aCL5293Contig1 | C05070F01 | AT3G03050 | – | 0.68 |
| UDP-GLUCOSE 4-EPIMERASE | |||||
| CitUGE1 | aC31108G08EF_c | C31108G08 | AT4G10960 | – | 0.95 |
| CitUGE2 | aCL6604Contig1 | C03009D04 | AT1G12780 | – | 0.82 |
| MANNAN SYNTHASES | |||||
| CitManS1 | aCL3377Contig1 | IC0AAA16BH03 | AT5G22740 | – | 1.47 |
| CitManS2 | aCL3377Contig2 | IC0AAA99AD02 | AT5G22740 | – | 1.36 |
| GALACTOMANNAN GALACTOSYLTRANSFERASE (GMGT) | |||||
| CitGMGT1 | aC34004D03EF_c | IC0AAA58DH01 | AT2G22900 | – | 1.35 |
| RHAMNOSE BIOSYNTHETIC ENZYME | |||||
| CitRHM1 | aCL4478Contig1 | KN0AAI3AD11 | AT1G78570 | −0.52 | – |
| GLUCOSYLTRANSFERASES | |||||
| CitGTF1 | aCL3010Contig2 | IC0AAA58BE08 | AT1G77130 | 0.82 | – |
| CitGTF2 | aCL1592Contig1 | IC0AAA30DE02 | AT1G16570 | 0.58 | – |
| CitGTF3 | aCL3054Contig2 | KN0AAK3DE03 | AT3G50060 | – | 1.21 |
| CitGTF4 | aCL6931Contig1 | IC0AAA42BE09 | AT3G25140 | – | 0.65 |
| CitGTF5 | aCL5570Contig1 | C05056H08 | AT1G77990 | −1.42 | −1.51 |
| CitGTF6 | aCL6758Contig1 | C31701H10 | AT3G02100 | – | −1.23 |
| CitGTF7 | aKN0AAB3DB09ZM1_c | KN0AAB3DB09 | AT3G45400 | – | 0.60 |
| GDP-L-FUCOSE SYNTHASE | |||||
| CitGLFS1 | aCL790Contig1 | IC0AAA85AB07 | AT1G17890 | – | 0.73 |
| GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE | |||||
| CitGLFT1 | aIC0AAA69BA06RM1_c | IC0AAA69BA06 | AT1G74420 | – | 0.58 |
| CitGLFT2 | aCL5210Contig1 | C08029G10 | AT1G05575 | −0.87 | −1.24 |
| UDP-GLUCOSE DEHYDROGENASE | |||||
| CitUGD1 | aKN0AAP5YD20FM1_c | KN0AAP5YD20 | AT5G15490 | – | 0.51 |
| GLUCURONOSYL TRANSFERASE-LIKE PROTEIN | |||||
| CitGluT1 | aCL8573Contig1 | C02015B05 | AT3G55700 | – | −0.54 |
| UDP-GLUCURONATE DECARBOXYLASE | |||||
| CitUGluD1 | aCL1799Contig2 | C02011A11 | AT2G28760 | 1.67 | 1.57 |
| MANNOSYLTRANSFERASE-LIKE PROTEIN | |||||
| CitManT1 | aIC0AAA25BC01RM1_c | IC0AAA25BC01 | AT2G27100 | 0.77 | 0.60 |