Table 2. OVO SVM Classification of Mixed Genomic DNA Samples.
Experiment | Species Mixture | Absorbance |
U-dHRM |
||
---|---|---|---|---|---|
Targeted Ratio of Genomes | Estimated Number of Genomes Added to Chip | Measured Number of Genomes On-Chip | Measured Ratio of Genomes | ||
1 | S. pneumoniae | 289 | 60 | ||
L. monocytogenes | 1:1 | 458 | 113 | 1: 1.88 | |
2 | S. pneumoniae | 1445 | 238 | ||
L. monocytogenes | 3:1 | 458 | 119 | 2:1 |
DPCR chips were loaded with polymicrobial samples containing different proportions (ratios) of S. pneumoniae DNA to L. monocytogenes DNA to mimic challenging detection scenarios where one organism dominates a test sample. The targeted mixture ratios were created based on absorbance measurements of individual bacterial DNA concentrations using an Eppendorf Biospectrometer and then analyzed by U-dHRM and OVO SVM classification.