Table 1.
Examples of available online brain atlases.
| Specie | Atlas Name | Comments | Link | Selected References |
|---|---|---|---|---|
| Human | The Human Brain Atlas at Michigan State University | MRI from one specimen + myelin and cell bodies staining | https://msu.edu/~brains/brains/human/index.html | Tool developed by Sudheimer, K.D.; Winn, B.M.; Kerndt, G.M.; Shoaps, J.M.; Davis, K.K.; Fobbs Jr., A.J.; Johnson; J.I. |
| Allen Brain Atlas | MRI, in situ hybridization, microarray | http://human.brain-map.org/ | [272,275,276] | |
| Scalable Brain Atlas | Brain atlas templates for different species | https://scalablebrainatlas.incf.org/main/index.php | [277] | |
| Atlas of the Human Brain | Macroscopic and microscopic levels | http://www.thehumanbrain.info/ | [293] | |
| Human Connectome Project | MRI-based imaging modalities to measure brain architecture, function and connectivity | http://www.humanconnectomeproject.org/ | [278,279,280,281] | |
| BigBrain | Cell bodies’ staining | https://bigbrain.loris.ca/main.php | [282] | |
| Jubrain | Probabilistic maps based on post mortem brains | https://www.jubrain.fz-juelich.de/apps/cytoviewer/cytoviewer-main.php | [283] | |
| The Whole Brain Atlas | Contains atlas from different cerebrovascular diseases | http://www.med.harvard.edu/aanlib/home.html | [284] | |
| Human Brainnetome Atlas | Structural and connectivity features | http://atlas.brainnetome.org/ | [285] | |
| Brain Development Atlases (Imperial College London) | Different atlas datasets are available (adult, pediatric and neonatal) | http://brain-development.org/brain-atlases/ | [286,287,288] | |
| FSL Atlas | Library of analysis tools for FMRI, MRI and DTI brain imaging data | http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/ | [289] | |
| Rodents | Allen Brain Atlas | Includes developing brain, spinal cord and connectivity brain atlas | http://mouse.brain-map.org/ | [271,276] |
| Mouse Atlas Project | Contains also a neonatal brain atlas | http://map.loni.usc.edu/ | [290] | |
| The Mouse Brain Library | Includes developing mouse brain atlas | http://www.mbl.org/ | Tool developed by Williams, R.W. and colleagues | |
| Others | Zebrafish Brain Atlas | Includes information about the neuroanatomy of the developing zebrafish brain | http://zebrafishbrain.org/ | [291] |
| Blueprint Atlas (Rhesus macaque) | Gene expression data, neuroanatomical data | http://www.blueprintnhpatlas.org/ | [274] | |
| Virtual Fly Brain (Drosophila melanogaster) | Neural anatomy and imaging data | http://www.virtualflybrain.org/ | [292] |