Table 4.

Ontology terms and annotations of indels adding SNPs genes.

Category	Term	Count	Genes	Benjamin	FDR
Up keywords	Phosphoprotein	56	PLXNA3, KCNC3, TUSC5, E2F7, CCT2, CTNNB1, KCNQ5, MAP3K9, H2AFX, RBM10, AR, CCNK, C16ORF62, MED12, KRT10, KIAA0586, MBD2, LRCH1, KRT16, BHMT, NEK8, CLIP1, UNC13C, RNF20, GIGYF2, EP400, KDM6B, PTOV1, IRX5, THAP4, KEL, USP9X, NOC3L, N4BP2, TFAM, APOBR, PKD1, KRI1, DDX42, MAP2K1, HTT, MYO1E, ARID3A, ATAD2, DOCK8, SAFB2, ATXN2, ATXN3, PAPOLA, PHF2, KCMF1, WDR62, IRF2BPL, PLAU, TPRN, AHDC1	0.004376	0.086018
Up keywords	Coiled coil	29	LRRIQ3, THAP4, NOC3L, TBP, N4BP2, MAP3K9, PKD1, KRI1, DDX42, AR, MAP2K1, HTT, ATAD2, KRT10, KIAA0586, BCAP31, ATXN2, ATXN3, PHF2, KCMF1, LRCH1, IRF2BPL, KRT16, CLIP1, UNC13C, RNF20, GIGYF2, EP400, TPRN	0.003907	0.102373
Up seqfeature	Compositionally biased region: Poly-Gln	10	ATXN2, CCNK, AR, ATXN3, KCNC3, IRF2BPL, HTT, KIAA0586, TBP, EP400	1.95 × 10−5	4.58 × 10−5
Up keywords	Mental retardation	10	IRX5, MAP2K1, WDR62, USP9X, SETBP1, MED12, DOCK8, CTNNB1, AHDC1, BCAP31	6.05 × 10−4	0.007916
Goterm mf direct	GO:0003682~chromatin binding	10	TFAM, AR, NOC3L, ARID3A, MED12, ATAD2, MBD2, RNF20, EP400, KDM6B	0.022881	0.147425
Up keywords	Triplet repeat expansion	6	ATXN2, AR, ATXN3, IRF2BPL, HTT, TBP	3.76 × 10−5	2.46 × 10−4

FDR: false discover rate.