Table 2.

Wald statistics for the association of simple‐sequence repeat (SSR) and Diversity Array Technology (DArT) loci with Septoria, adjusted for the association with plant height (AdjSTB), shown by single marker associations with no random effect (linear model) or with similarity matrices calculated from the pedigree or markers (K_T model) as random effects.

	Locus			Linear model		Pedigree model		KT model		Significant in two‐marker model ‡
Chr.	Marker*	cM †	Alleles	Wald	P	Wald	P	Wald	P
1D	Xgwm337	47	4	22.16	<0.001	6.13	0.1	14.29	0.004
	wPt5320	49	2	19.28	<0.001	10.58	0.001	21.19	<0.001	X
	wPt9380	53	2	9.26	0.003	3.09	0.08	8.56	0.004
	wPt8545	191	2	10.17	0.002	11.48	<0.001	10.17	0.002
2A	wPt8132	7	2	9.19	0.003	5.46	0.02	8.63	0.004	X
	wPt2087	7	2	4.03	0.05	7.33	0.007	4.34	0.04
	wPt7187	13	2	4.04	0.05	7.01	0.009	4.97	0.03
	wPt6662	170	2	9.08	0.003	12.27	<0.001	8.69	0.004
2B	Xwmc154	66	4	28.71	<0.001	21.27	<0.001	13.07	0.002	X
	Xbarc167	158	2	12.24	<0.001	2.05	0.2	9.55	0.002
	Xgwm388	174	3	12.01	0.004	7.95	0.02	11.84	0.004
2D	wPt9997	126	2	8.70	0.004	3.95	0.05	10.06	0.002
	Xgwm539	178	5	17.89	0.002	7.38	0.1	19.29	0.001
	Xgwm349	196	4	24.28	<0.001	9.46	0.03	16.97	0.002	X
3A	Xbarc12	20	4	19.07	<0.001	6.13	0.1	12.62	0.009	X
	Xgwm369	31	2	10.88	0.001	3.59	0.06	4.3	0.04
	Xbarc45	49	4	13.58	0.005	8.61	0.04	8.68	0.04
	wPt7756	51	2	12.06	<0.001	2.07	0.2	8.36	0.004
	wPt7608	51	2	14.78	<0.001	3.02	0.08	10.71	0.001
4A	Xdupw4	104	4	16.69	0.001	12.96	0.007	14.4	0.004	X
4B	wPt3991	51	2	11.73	<0.001	1.20	0.3	8.06	0.005
	wPt7062	78	2	14.10	<0.001	1.91	0.2	11.52	<0.001	X
	Xbarc163	83	3	18.93	<0.001	7.61	0.03	11.15	0.006
5B	Xgwm335	88	3	5.11	0.08	6.61	0.04	7.16	0.03
5D	wPt1400	101	2	4.37	0.04	2.72	0.1	5.94	0.02
	wPt9788	182	2	20.62	<0.001	3.46	0.02	16.72	<0.001	X
6A	Xpsp3029.1	27	2	11.05	0.001	3.94	0.05	2.47	0.1
	Xpsp3029.2	106	5	23.40	<0.001	8.79	0.08	20.81	<0.001
	Xpsp3071	108	4	35.85	<0.001	14.48	0.004	25.44	<0.001	X
	Xgwm570	140	4	29.60	<0.001	9.95	0.02	17.13	0.002
6B	wPt9594	31	2	5.64	0.02	4.96	0.03	7.14	0.008
	Xgwm626	98	2	4.66	0.03	5.90	0.02	6.95	0.01	X
7B	Xbarc72	49	3	10.75	0.006	4.05	0.1	9.1	0.01
	wPt2356	136	2	5.13	0.03	4.41	0.04	6.76	0.01	X

*Only markers significantly associated with AdjSTB in the pedigree or K_T models are shown (P ≤ 0.05 for SSRs or P ≤ 0.01 for DArT markers).

^†Map distances are based on the composite map of Maccaferri et al. (2015). Details are given in Notes S1 (see Supporting Information).

^‡Combinations of significant markers (P < 0.05) for AdjSTB were tested as two‐marker models against single‐marker models by a likelihood ratio test.