Fig 11. S. aureus proteome comparing in vitro cultures of the isolate from AUP sample #112 to in vivo data derived from sequential extraction of the clinical specimen.
The UPsol fractions were defined in the main text. The isolate was grown in LB media to mid-exponential (EXP) and stationary (STAT) phases. Protein quantification was based on MaxQuant analysis, and proteins were assigned to three groups based on their roles in ribosomal protein synthesis, energy metabolism and cell envelope localization as annotated in the database UniProt. Black-rimmed boxes are the combined quantities of the cell wall enzymes Atl and IsaA. Detailed bacterial protein profiles are provided in S7 Data.