Table 2.

General mapping information for the 20 Puccinia triticina isolates.

Isolate	Pair	Total reads	Mapped reads	% Mapped reads	Average depth of cover	% of reference covered by the reads
760285	1	51,764,276	40,827,968	78.9	28.9	97.6
630846	1	70,048,288	55,559,224	79.3	38.8	97.6
790197	2	71,405,410	56,812,142	79.6	39.6	97.3
670028	2	71,622,608	57,466,213	80.2	40	97.7
730003	6	74,683,730	55,381,229	74.2	38.7	97.7
66-L-3	6	68,912,142	55,179,318	80.1	38.6	97.5
60-L-2	7	47,791,600	38,719,913	81.0	27.5	97.5
64-L-3	7	88,145,358	71,086,601	80.6	49.6	97.6
630550	9	67,044,878	53,907,198	80.4	37.6	97.5
BCL 75	9	61,007,614	49,381,730	80.9	34.6	97.3
750299	10	72,470,524	57,394,609	79.2	40.1	97.9
700201	10	69,898,526	55,865,395	79.9	38.9	98.5
740408	11	74,849,258	60,626,983	81.0	42.3	97.9
740606	11	74,179,490	59,062,056	79.6	41.1	97.8
700575	12	58,917,520	47,593,247	80.8	33.5	97.9
QWRI	12	62,858,660	47,787,010	76.0	33.3	97.8
900084	13	53,552,614	43,178,267	80.6	30.3	97.6
900273	13	64,944,794	49,761,366	76.6	34.8	97.8
89-L-1	14	69,516,584	55,126,898	79.3	38.4	97.9
890155	14	68,046,788	51,725,917	76.0	36.0	98.5