Table 6.

Expression of Lr20 candidates in pair 9 isolates during in planta interaction.

Gene ID	Fold Change BCL75 vs. 630550	BCL75-Cs-RPKM	BCL-75-Cs/Ax-RPKM	BCL-75—Means	630550-Cs-RPKM	630550-Cs/Ax-RPKM	630550—Means	Amino acid size
PTTG_00930	−1.2	143.57	114.9	129.24	128.89	177.23	153.06	196
PTTG_00931	−1.2	490.86	428.66	459.76	483.57	618.89	551.23	209
PTTG_01476	−1.1	8.88	9.55	9.22	10.53	9.32	9.93	521
PTTG_03715	−1.5	100.51	119.61	110.06	188.48	139.89	164.19	453
PTTG_03824	3.6	0.3	0.07	0.18	0.1	0	0.05	401
PTTG_03866	−1.2	167.87	181.25	174.56	210.26	207.5	208.88	499
PTTG_06324	1.1	532.53	451.83	492.18	392.15	489.76	440.95	296
PTTG_06325	−1.8	102.79	106.04	104.41	160.86	210.77	185.82	280
PTTG_06625	1.8	6.97	6.15	6.56	3.74	3.52	3.63	504
PTTG_08794	1.3	473.79	436.5	455.14	294.98	390.38	342.68	134
PTTG_09239	1.0	114.52	145.78	130.15	164.66	90.41	127.53	190
PTTG_11639	−2.1	1.62	2.52	2.07	4.25	4.62	4.43	226
PTTG_25257	NA	0	0	0	0.22	0	0.11	125
PTTG_25496	1.1	21.19	23.77	22.48	18.88	21.79	20.33	180
PTTG_26540	1.0	49.71	48.48	49.09	49.81	45.32	47.56	520
PTTG_29866	1.0	5.02	4.57	4.79	5.87	3.46	4.67	805
PTTG_30778	NA	0.19	0	0.09	0	0	0	212

Cs, Chinese spring; Cs/Ax, Chinese spring near isogenic line.

BCL-75: pair 9, Lr20 virulent; 630550: pair 9, Lr20 avirulent.

Fold change: “−” and “+” indicated down- and up-regulation in BCL-75 vs. 630550.

RPKM, reads per kilobase per million mapped reads.

NA, not applicable.